Cpt1a (carnitine palmitoyltransferase 1a, liver) - Rat Genome Database

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Gene: Cpt1a (carnitine palmitoyltransferase 1a, liver) Mus musculus
Analyze
Symbol: Cpt1a
Name: carnitine palmitoyltransferase 1a, liver
RGD ID: 10390
MGI Page MGI
Description: Enables carnitine O-palmitoyltransferase activity and palmitoleoyltransferase activity. Predicted to be involved in several processes, including carnitine metabolic process; positive regulation of fatty acid beta-oxidation; and regulation of insulin secretion. Predicted to act upstream of or within lipid metabolic process. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; integumental system; sensory organ; and urinary system. Used to study carnitine palmitoyltransferase I deficiency. Human ortholog(s) of this gene implicated in carnitine palmitoyltransferase I deficiency and lipid metabolism disorder. Orthologous to human CPT1A (carnitine palmitoyltransferase 1A); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; INTERACTS WITH (+)-dexrazoxane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C730027G07; carnitine O-palmitoyltransferase 1, liver isoform; carnitine O-palmitoyltransferase I, liver isoform; carnitine palmitoyltransferase 1, liver; CP; Cpt; CPT I; Cpt1; CPT1-L; CPTI; CPTI-L; L-CPT I
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,372,328 - 3,435,735 (+)NCBIGRCm39mm39
GRCm39 Ensembl193,372,334 - 3,435,733 (+)Ensembl
GRCm38193,322,326 - 3,385,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,322,334 - 3,385,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,323,301 - 3,385,733 (+)NCBIGRCm37mm9NCBIm37
MGSCv36193,334,513 - 3,385,732 (+)NCBImm8
Celera193,192,535 - 3,255,204 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(+)-schisandrin B  (ISO)
(+)-taxifolin  (ISO)
(R)-carnitine  (ISO)
(R)-lipoic acid  (ISO)
(R)-noradrenaline  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-naringenin  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-benzoquinone  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)propanoic acid  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-amino-2-deoxy-D-galactopyranose  (ISO)
2-chloroethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
AICA ribonucleotide  (EXP,ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP)
alpha-linolenic acid  (ISO)
AM-251  (EXP)
amiodarone  (EXP,ISO)
amlexanox  (EXP)
antirheumatic drug  (ISO)
arachidonic acid  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP,ISO)
atorvastatin calcium  (ISO)
atrazine  (EXP)
benzamides  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
benzylpenicillin  (EXP)
berberine  (EXP)
beta-hexachlorocyclohexane  (EXP)
bezafibrate  (EXP,ISO)
bifenthrin  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calciol  (ISO)
capsaicin  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
chenodeoxycholic acid  (EXP)
chloroethene  (EXP)
chlorothalonil  (EXP)
chlorpyrifos  (EXP)
cholesterol  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
Clofop  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
corticosterone  (ISO)
cortisol  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
D-glucose  (EXP,ISO)
D-penicillamine  (EXP,ISO)
daidzein  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dehydroepiandrosterone sulfate  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dihydroartemisinin  (ISO)
Diosbulbin B  (EXP)
dioscin  (EXP,ISO)
dioxygen  (ISO)
dipentyl phthalate  (ISO)
dobutamine  (ISO)
dopamine  (ISO)
dorsomorphin  (EXP,ISO)
doxorubicin  (EXP,ISO)
dronedarone  (EXP)
entinostat  (ISO)
erythromycin A  (EXP)
ethanol  (EXP,ISO)
farnesol  (ISO)
fenamidone  (EXP)
fenofibrate  (EXP,ISO)
flutamide  (EXP,ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
fructose  (ISO)
gadolinium trichloride  (ISO)
Ganoderic acid A  (EXP)
Gastrodin  (EXP)
gemfibrozil  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucagon  (EXP)
glucose  (EXP,ISO)
glutathione  (ISO)
glycine betaine  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
guggulsterone  (EXP,ISO)
GW 4064  (ISO)
GW 501516  (EXP,ISO)
GW 7647  (ISO)
Heptachlor epoxide  (EXP)
hexadecanoic acid  (EXP,ISO)
hydralazine  (ISO)
indometacin  (ISO)
isoniazide  (EXP)
isoprenaline  (ISO)
ivermectin  (EXP,ISO)
kaempferol  (ISO)
L-methionine  (EXP)
lamivudine  (EXP)
leflunomide  (EXP,ISO)
levofloxacin  (ISO)
linoleic acid  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
liraglutide  (EXP)
losartan  (ISO)
mangiferin  (ISO)
mercury dibromide  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
metoprolol  (ISO)
miquelianin  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monosodium L-glutamate  (EXP,ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
naringin  (EXP)
nefazodone  (ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
Nonylphenol  (ISO)
obeticholic acid  (EXP,ISO)
oleic acid  (EXP,ISO)
orlistat  (ISO)
osthole  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (ISO)
palmitoyl-CoA  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
paricalcitol  (ISO)
penconazole  (EXP)
perflubutane  (ISO)
perfluorobutyric acid  (ISO)
perfluorodecanoic acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorohexanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phlorizin  (EXP)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
picrotoxin  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP,ISO)
procymidone  (EXP)
propiconazole  (EXP,ISO)
pterostilbene  (ISO)
puerarin  (EXP)
quercetin  (EXP,ISO)
rebaudioside A  (EXP)
resveratrol  (EXP,ISO)
rifampicin  (EXP)
rimonabant  (ISO)
rotenone  (EXP,ISO)
saroglitazar  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP)
Sodium oleate  (ISO)
sorafenib  (ISO)
starch  (EXP)
stavudine  (EXP)
steviol  (EXP)
stevioside  (EXP)
streptozocin  (EXP,ISO)
sucrose  (EXP)
sulforaphane  (ISO)
tamoxifen  (EXP)
taurine  (ISO)
tectoridin  (EXP)
Tesaglitazar  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (ISO)
tetracycline  (EXP,ISO)
tetrahydropalmatine  (ISO)
tetrathiomolybdate(2-)  (ISO)
thiacloprid  (EXP)
thiophanate-methyl  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
tributyl phosphate  (ISO)
tributylstannane  (EXP)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tris(2-chloroethyl) phosphate  (ISO)
Tris(2-ethylhexyl) phosphate  (ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (ISO)
urea  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (ISO)
vinclozolin  (ISO)
wortmannin  (ISO)
zidovudine  (EXP)
zinc atom  (EXP,ISO)
zinc sulfate  (ISO)
zinc(0)  (EXP,ISO)
ziram  (EXP)
zoledronic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:7892212   PMID:8307575   PMID:8830050   PMID:9013572   PMID:9070836   PMID:9070950   PMID:9680378   PMID:9883726   PMID:10349636   PMID:10922068   PMID:11023836   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:12107181   PMID:12477932   PMID:12493735   PMID:12540837   PMID:12865426   PMID:12920182   PMID:14610273   PMID:14681479   PMID:15226823   PMID:15489334  
PMID:15677504   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16169268   PMID:16271724   PMID:16602821   PMID:17030509   PMID:17967808   PMID:18082622   PMID:18614015   PMID:18799693  
PMID:20124555   PMID:21267068   PMID:21873635   PMID:21990363   PMID:22055502   PMID:22229081   PMID:22262455   PMID:23905631   PMID:24086110   PMID:25124681   PMID:25213552   PMID:25713059  
PMID:25830893   PMID:26253087   PMID:26452216   PMID:26508642   PMID:26647854   PMID:27110821   PMID:27113764   PMID:27133129   PMID:27146480   PMID:27507552   PMID:27659424   PMID:27689697  
PMID:27746183   PMID:27941154   PMID:27997827   PMID:28007964   PMID:28024299   PMID:28159809   PMID:28330968   PMID:28364022   PMID:28378742   PMID:28854364   PMID:29385670   PMID:29396649  
PMID:29512720   PMID:29727683   PMID:29795111   PMID:29898400   PMID:30043752   PMID:30043753   PMID:30111574   PMID:30146488   PMID:30196744   PMID:30333037   PMID:30352954   PMID:30401637  
PMID:30571144   PMID:30611282   PMID:30635360   PMID:30639412   PMID:30818059   PMID:31361546   PMID:31527712   PMID:31823799   PMID:32129527   PMID:32581705   PMID:32913122   PMID:32913185  
PMID:32973137   PMID:33059001   PMID:33465052   PMID:33517883   PMID:34107251   PMID:34392303   PMID:34474245  


Genomics

Comparative Map Data
Cpt1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,372,328 - 3,435,735 (+)NCBIGRCm39mm39
GRCm39 Ensembl193,372,334 - 3,435,733 (+)Ensembl
GRCm38193,322,326 - 3,385,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,322,334 - 3,385,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,323,301 - 3,385,733 (+)NCBIGRCm37mm9NCBIm37
MGSCv36193,334,513 - 3,385,732 (+)NCBImm8
Celera193,192,535 - 3,255,204 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.08NCBI
CPT1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1168,754,620 - 68,844,410 (-)EnsemblGRCh38hg38GRCh38
GRCh381168,754,620 - 68,844,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371168,522,088 - 68,609,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,278,664 - 68,365,881 (-)NCBINCBI36hg18NCBI36
Build 341168,281,656 - 68,365,881NCBI
Celera1165,858,303 - 65,945,748 (-)NCBI
Cytogenetic Map11q13.3NCBI
HuRef1164,858,312 - 64,945,656 (-)NCBIHuRef
CHM1_11168,405,839 - 68,493,144 (-)NCBICHM1_1
Cpt1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21200,564,634 - 200,627,059 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1200,565,613 - 200,627,055 (+)Ensembl
Rnor_6.01218,568,157 - 218,629,679 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,569,510 - 218,629,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,436,031 - 225,497,586 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,852,800 - 205,912,972 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11206,006,198 - 206,066,422 (+)NCBI
Celera1198,121,771 - 198,182,510 (+)NCBICelera
Cytogenetic Map1q42NCBI
Cpt1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,109,256 - 17,159,838 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,105,887 - 17,159,696 (+)NCBIChiLan1.0ChiLan1.0
CPT1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11167,144,803 - 67,205,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1167,144,736 - 67,205,481 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01163,841,028 - 63,928,242 (-)NCBIMhudiblu_PPA_v0panPan3
CPT1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,136,691 - 49,190,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,136,691 - 49,190,117 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1847,743,088 - 47,799,620 (+)NCBI
ROS_Cfam_1.01849,940,828 - 50,105,306 (+)NCBI
UMICH_Zoey_3.11849,269,286 - 49,326,013 (+)NCBI
UNSW_CanFamBas_1.01848,842,887 - 48,899,833 (+)NCBI
UU_Cfam_GSD_1.01849,588,821 - 49,693,664 (+)NCBI
Cpt1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,055,750 - 5,092,752 (+)NCBI
SpeTri2.0NW_0049365991,491,934 - 1,535,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,233,099 - 4,293,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,250,642 - 4,293,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,844,854 - 2,874,141 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPT1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,704,275 - 5,784,077 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl15,730,853 - 5,784,337 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038102,984,159 - 103,065,332 (+)NCBIVero_WHO_p1.0
Cpt1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476718,109,011 - 18,161,378 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH128242  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,385,427 - 3,385,609UniSTSGRCm38
MGSCv37193,385,427 - 3,385,609UniSTSGRCm37
Celera193,254,898 - 3,255,080UniSTS
Cytogenetic Map19AUniSTS
cM Map192.0UniSTS
AA960192  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,385,502 - 3,385,605UniSTSGRCm38
MGSCv37193,385,502 - 3,385,605UniSTSGRCm37
Celera193,254,973 - 3,255,076UniSTS
Cytogenetic Map19AUniSTS
cM Map192.0UniSTS
Whitehead/MRC_RH1968.32UniSTS
RH124976  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,384,927 - 3,385,028UniSTSGRCm38
MGSCv37193,384,927 - 3,385,028UniSTSGRCm37
Celera193,254,398 - 3,254,499UniSTS
Cytogenetic Map19AUniSTS
cM Map192.0UniSTS
Cpt1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19AUniSTS
cM Map192.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:710
Count of miRNA genes:419
Interacting mature miRNAs:523
Transcripts:ENSMUST00000025835
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF017175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH004894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL626765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ081259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D49472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025835   ⟹   ENSMUSP00000025835
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,373,285 - 3,435,733 (+)Ensembl
GRCm38.p6 Ensembl193,323,285 - 3,385,733 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,373,348 - 3,401,674 (+)Ensembl
GRCm38.p6 Ensembl193,323,348 - 3,351,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237444
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,425,040 - 3,428,498 (+)Ensembl
GRCm38.p6 Ensembl193,375,040 - 3,378,498 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,416,330 - 3,419,217 (+)Ensembl
GRCm38.p6 Ensembl193,366,330 - 3,369,217 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237562   ⟹   ENSMUSP00000158480
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,383,725 - 3,408,277 (+)Ensembl
GRCm38.p6 Ensembl193,333,725 - 3,358,277 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237938   ⟹   ENSMUSP00000158035
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,372,334 - 3,420,748 (+)Ensembl
GRCm38.p6 Ensembl193,322,334 - 3,370,748 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238015   ⟹   ENSMUSP00000157988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,391,627 - 3,414,538 (+)Ensembl
GRCm38.p6 Ensembl193,341,627 - 3,364,538 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238027
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,426,344 - 3,433,866 (+)Ensembl
GRCm38.p6 Ensembl193,376,344 - 3,383,866 (+)Ensembl
RefSeq Acc Id: NM_013495   ⟹   NP_038523
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,373,301 - 3,435,733 (+)NCBI
GRCm38193,323,301 - 3,385,733 (+)NCBI
MGSCv37193,323,301 - 3,385,733 (+)RGD
Celera193,192,535 - 3,255,204 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531654   ⟹   XP_006531717
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,374,670 - 3,435,735 (+)NCBI
GRCm38193,324,671 - 3,385,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531658   ⟹   XP_006531721
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,391,851 - 3,435,735 (+)NCBI
GRCm38193,341,852 - 3,385,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531659   ⟹   XP_006531722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,383,794 - 3,435,735 (+)NCBI
GRCm38193,333,794 - 3,385,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248602   ⟹   XP_011246904
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,372,328 - 3,435,735 (+)NCBI
GRCm38193,322,326 - 3,385,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161416   ⟹   XP_036017309
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,373,257 - 3,435,735 (+)NCBI
RefSeq Acc Id: XM_036161417   ⟹   XP_036017310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,383,794 - 3,429,994 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_038523   ⟸   NM_013495
- UniProtKB: P97742 (UniProtKB/Swiss-Prot),   Q3UGT1 (UniProtKB/TrEMBL),   Q7TQD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531717   ⟸   XM_006531654
- Peptide Label: isoform X1
- UniProtKB: P97742 (UniProtKB/Swiss-Prot),   Q7TQD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531722   ⟸   XM_006531659
- Peptide Label: isoform X1
- UniProtKB: P97742 (UniProtKB/Swiss-Prot),   Q7TQD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531721   ⟸   XM_006531658
- Peptide Label: isoform X1
- UniProtKB: P97742 (UniProtKB/Swiss-Prot),   Q7TQD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246904   ⟸   XM_011248602
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000158035   ⟸   ENSMUST00000237938
RefSeq Acc Id: ENSMUSP00000158480   ⟸   ENSMUST00000237562
RefSeq Acc Id: ENSMUSP00000025835   ⟸   ENSMUST00000025835
RefSeq Acc Id: ENSMUSP00000157988   ⟸   ENSMUST00000238015
RefSeq Acc Id: XP_036017309   ⟸   XM_036161416
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036017310   ⟸   XM_036161417
- Peptide Label: isoform X3
Protein Domains
Carn_acyltransf   CPT_N

Promoters
RGD ID:6829931
Promoter ID:MM_KWN:25924
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_013495
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36193,322,476 - 3,323,572 (+)MPROMDB
RGD ID:13678330
Promoter ID:EPDNEW_M23314
Type:multiple initiation site
Name:Cpt1a_1
Description:Mus musculus carnitine palmitoyltransferase 1a, liver , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23315  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38193,323,348 - 3,323,408EPDNEW
RGD ID:13678332
Promoter ID:EPDNEW_M23315
Type:single initiation site
Name:Cpt1a_2
Description:Mus musculus carnitine palmitoyltransferase 1a, liver , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23314  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38193,338,047 - 3,338,107EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098296 AgrOrtholog
Ensembl Genes ENSMUSG00000024900 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000025835 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000157988 UniProtKB/TrEMBL
  ENSMUSP00000158035 UniProtKB/TrEMBL
  ENSMUSP00000158480 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025835 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000237562 UniProtKB/TrEMBL
  ENSMUST00000237938 UniProtKB/TrEMBL
  ENSMUST00000238015 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.20 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carn_acyl_trans_N UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPT_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12894 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1098296 ENTREZGENE
NCBI Gene 12894 ENTREZGENE
PANTHER PTHR22589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPT_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cpt1a PhenoGen
PROSITE ACYLTRANSF_C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BAC7_MOUSE UniProtKB/TrEMBL
  A0A494BAD3_MOUSE UniProtKB/TrEMBL
  A0A494BBF2_MOUSE UniProtKB/TrEMBL
  A8ASF5_MOUSE UniProtKB/TrEMBL
  CPT1A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UGT1 ENTREZGENE, UniProtKB/TrEMBL
  Q7TQD5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary O35288 UniProtKB/Swiss-Prot
  Q80SW3 UniProtKB/Swiss-Prot
  Q8BP98 UniProtKB/Swiss-Prot
  Q8C7H8 UniProtKB/Swiss-Prot