Vps37c (vacuolar protein sorting 37C) - Rat Genome Database

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Gene: Vps37c (vacuolar protein sorting 37C) Mus musculus
Analyze
Symbol: Vps37c
Name: vacuolar protein sorting 37C
RGD ID: 1618244
MGI Page MGI
Description: Predicted to enable calcium-dependent protein binding activity. Predicted to be involved in protein targeting to membrane; protein targeting to vacuole; and ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within protein transport. Predicted to be located in endosome and membrane. Predicted to be part of ESCRT I complex. Is expressed in glossopharyngeal ganglion; liver lobe; trigeminal ganglion; and vibrissa. Orthologous to human VPS37C (VPS37C subunit of ESCRT-I).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730409F24Rik; AU042646; ESCRT-I complex subunit VPS37C; vacuolar protein sorting 37C (yeast); vacuolar protein sorting-associated protein 37C
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,666,095 - 10,691,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,666,099 - 10,691,991 (+)EnsemblGRCm39 Ensembl
GRCm381910,688,735 - 10,714,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,688,735 - 10,714,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,763,305 - 10,788,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,755,860 - 10,781,464 (+)NCBIMGSCv36mm8
Celera1911,387,159 - 11,414,512 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endosome  (IEA)
ESCRT I complex  (IBA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:28378742   PMID:32325033   PMID:36417873  


Genomics

Comparative Map Data
Vps37c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,666,095 - 10,691,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,666,099 - 10,691,991 (+)EnsemblGRCm39 Ensembl
GRCm381910,688,735 - 10,714,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,688,735 - 10,714,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,763,305 - 10,788,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,755,860 - 10,781,464 (+)NCBIMGSCv36mm8
Celera1911,387,159 - 11,414,512 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.16NCBI
VPS37C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,130,257 - 61,161,426 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,130,257 - 61,161,615 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,897,729 - 60,928,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,654,304 - 60,685,492 (-)NCBINCBI36Build 36hg18NCBI36
Celera1158,257,905 - 58,289,087 (-)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,241,628 - 57,272,809 (-)NCBIHuRef
CHM1_11160,761,998 - 60,793,179 (-)NCBICHM1_1
T2T-CHM13v2.01161,081,750 - 61,112,918 (-)NCBIT2T-CHM13v2.0
Vps37c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,760,675 - 216,787,198 (+)NCBIGRCr8
mRatBN7.21207,336,694 - 207,362,295 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,336,731 - 207,362,289 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,715,355 - 215,740,904 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,770,930 - 222,796,483 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,465,930 - 215,491,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,742,267 - 226,774,109 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,742,343 - 226,767,868 (+)EnsemblRnor6.0rn6Rnor6.0
Celera1204,829,674 - 204,861,514 (+)NCBICelera
Cytogenetic Map1q43NCBI
Vps37c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,672,977 - 5,676,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,672,053 - 5,684,660 (-)NCBIChiLan1.0ChiLan1.0
VPS37C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,296,966 - 62,333,742 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,340,763 - 63,377,359 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,390,882 - 56,422,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,828,856 - 59,859,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,828,856 - 59,844,854 (-)Ensemblpanpan1.1panPan2
VPS37C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,204,918 - 55,212,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,205,469 - 55,212,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,757,368 - 53,786,133 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,232,821 - 56,261,541 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,232,879 - 56,261,533 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,290,683 - 55,319,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,912,010 - 54,940,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,793,111 - 55,821,878 (+)NCBIUU_Cfam_GSD_1.0
Vps37c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,711,636 - 11,737,077 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,843,281 - 1,850,937 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,843,330 - 1,850,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS37C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,632,927 - 10,643,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,614,198 - 10,643,545 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,167,657 - 10,175,719 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS37C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,686,887 - 12,717,335 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,686,708 - 12,717,365 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,050,915 - 110,081,430 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps37c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926383,580 - 396,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926383,725 - 395,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vps37c
941 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:396
Count of miRNA genes:312
Interacting mature miRNAs:338
Transcripts:ENSMUST00000087951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse

Markers in Region
D19Mit126  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381910,706,389 - 10,706,508UniSTSGRCm38
MGSCv371910,780,879 - 10,780,998UniSTSGRCm37
Celera1911,406,408 - 11,406,525UniSTS
Cytogenetic Map19AUniSTS
cM Map197.7UniSTS
Whitehead Genetic197.7UniSTS
Whitehead_YAC19 UniSTS
AU042646  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381910,714,351 - 10,714,457UniSTSGRCm38
MGSCv371910,788,841 - 10,788,947UniSTSGRCm37
Celera1911,414,444 - 11,414,550UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH19117.67UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX635445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO426419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000087951   ⟹   ENSMUSP00000085264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1910,666,115 - 10,691,990 (+)Ensembl
GRCm38.p6 Ensembl1910,688,751 - 10,714,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235921   ⟹   ENSMUSP00000158200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1910,666,129 - 10,691,991 (+)Ensembl
GRCm38.p6 Ensembl1910,688,765 - 10,714,627 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235927   ⟹   ENSMUSP00000158500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1910,666,115 - 10,691,990 (+)Ensembl
GRCm38.p6 Ensembl1910,688,751 - 10,714,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237240   ⟹   ENSMUSP00000158315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1910,666,099 - 10,691,985 (+)Ensembl
GRCm38.p6 Ensembl1910,688,735 - 10,714,621 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237437   ⟹   ENSMUSP00000158277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1910,666,127 - 10,688,681 (+)Ensembl
GRCm38.p6 Ensembl1910,688,763 - 10,711,317 (+)Ensembl
RefSeq Acc Id: NM_001361958   ⟹   NP_001348887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361959   ⟹   NP_001348888
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361960   ⟹   NP_001348889
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361961   ⟹   NP_001348890
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361962   ⟹   NP_001348891
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361963   ⟹   NP_001348892
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361964   ⟹   NP_001348893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,678,132 - 10,691,992 (+)NCBI
GRCm381910,700,768 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: NM_181403   ⟹   NP_852068
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,099 - 10,691,992 (+)NCBI
GRCm381910,688,735 - 10,714,628 (+)NCBI
MGSCv371910,763,305 - 10,788,909 (+)RGD
Celera1911,387,159 - 11,414,512 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526574   ⟹   XP_006526637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,678,335 - 10,691,992 (+)NCBI
GRCm381910,700,976 - 10,714,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161381   ⟹   XP_036017274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,095 - 10,691,992 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161382   ⟹   XP_036017275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,666,095 - 10,691,992 (+)NCBI
Sequence:
RefSeq Acc Id: NP_852068   ⟸   NM_181403
- Peptide Label: isoform 1
- UniProtKB: Q3TY76 (UniProtKB/Swiss-Prot),   Q8R105 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526637   ⟸   XM_006526574
- Peptide Label: isoform X1
- UniProtKB: Q3TY76 (UniProtKB/Swiss-Prot),   Q8R105 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001348887   ⟸   NM_001361958
- Peptide Label: isoform 1
- UniProtKB: Q8R105 (UniProtKB/Swiss-Prot),   Q3TY76 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348889   ⟸   NM_001361960
- Peptide Label: isoform 3
- UniProtKB: A0A494BAR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348892   ⟸   NM_001361963
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001348891   ⟸   NM_001361962
- Peptide Label: isoform 1
- UniProtKB: Q8R105 (UniProtKB/Swiss-Prot),   Q3TY76 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348890   ⟸   NM_001361961
- Peptide Label: isoform 1
- UniProtKB: Q8R105 (UniProtKB/Swiss-Prot),   Q3TY76 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348888   ⟸   NM_001361959
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001348893   ⟸   NM_001361964
- Peptide Label: isoform 1
- UniProtKB: Q8R105 (UniProtKB/Swiss-Prot),   Q3TY76 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000158315   ⟸   ENSMUST00000237240
RefSeq Acc Id: ENSMUSP00000158277   ⟸   ENSMUST00000237437
RefSeq Acc Id: ENSMUSP00000085264   ⟸   ENSMUST00000087951
RefSeq Acc Id: ENSMUSP00000158500   ⟸   ENSMUST00000235927
RefSeq Acc Id: ENSMUSP00000158200   ⟸   ENSMUST00000235921
RefSeq Acc Id: XP_036017274   ⟸   XM_036161381
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036017275   ⟸   XM_036161382
- Peptide Label: isoform X2
Protein Domains
VPS37 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R105-F1-model_v2 AlphaFold Q8R105 1-352 view protein structure

Promoters
RGD ID:13678924
Promoter ID:EPDNEW_M23611
Type:initiation region
Name:Vps37c_1
Description:Mus musculus vacuolar protein sorting 37C , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381910,688,795 - 10,688,855EPDNEW
RGD ID:6830510
Promoter ID:MM_KWN:26392
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000087951,   UC008GQR.1,   UC008GQS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361910,762,971 - 10,763,522 (+)MPROMDB
RGD ID:6849102
Promoter ID:MM_XEF:3605
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   MEF_B6
Transcripts:NM_001107463
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361910,763,616 - 10,764,116 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2147661 AgrOrtholog
Ensembl Genes ENSMUSG00000048832 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087951 ENTREZGENE
  ENSMUST00000087951.7 UniProtKB/Swiss-Prot
  ENSMUST00000235921 ENTREZGENE
  ENSMUST00000235921.2 UniProtKB/TrEMBL
  ENSMUST00000235927 ENTREZGENE
  ENSMUST00000235927.2 UniProtKB/Swiss-Prot
  ENSMUST00000237240.2 UniProtKB/TrEMBL
  ENSMUST00000237437.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.660 UniProtKB/Swiss-Prot
InterPro ESCRT_assembly_dom UniProtKB/Swiss-Prot
  Helix_hairpin_bin_sf UniProtKB/Swiss-Prot
  Mod_r UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:107305 UniProtKB/Swiss-Prot
MGD MGI:2147661 ENTREZGENE
NCBI Gene 107305 ENTREZGENE
PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mod_r UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vps37c PhenoGen
PROSITE VPS37_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF140111 UniProtKB/Swiss-Prot
UniProt A0A494BAR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BAY0_MOUSE UniProtKB/TrEMBL
  A0A494BB07_MOUSE UniProtKB/TrEMBL
  Q3TY76 ENTREZGENE
  Q8R105 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TY76 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 Vps37c  vacuolar protein sorting 37C    vacuolar protein sorting 37C (yeast)  Symbol and/or name change 5135510 APPROVED