Or5b113 (olfactory receptor family 5 subfamily B member 113) - Rat Genome Database

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Gene: Or5b113 (olfactory receptor family 5 subfamily B member 113) Mus musculus
Analyze
Symbol: Or5b113
Name: olfactory receptor family 5 subfamily B member 113
RGD ID: 1614098
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to act upstream of or within detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Orthologous to several human genes including OR5B3 (olfactory receptor family 5 subfamily B member 3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2RE5P-3695694-3696620; MOR202-; MOR202-15; olfactory receptor 1467; olfactory receptor MOR202-15; Olfr1467
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391913,341,994 - 13,342,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1913,339,600 - 13,345,418 (+)EnsemblGRCm39 Ensembl
GRCm381913,364,630 - 13,365,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1913,362,236 - 13,368,054 (+)EnsemblGRCm38mm10GRCm38
MGSCv371913,439,120 - 13,440,046 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361913,431,649 - 13,432,575 (+)NCBIMGSCv36mm8
Celera1914,034,276 - 14,035,202 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or5b113
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391913,341,994 - 13,342,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1913,339,600 - 13,345,418 (+)EnsemblGRCm39 Ensembl
GRCm381913,364,630 - 13,365,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1913,362,236 - 13,368,054 (+)EnsemblGRCm38mm10GRCm38
MGSCv371913,439,120 - 13,440,046 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361913,431,649 - 13,432,575 (+)NCBIMGSCv36mm8
Celera1914,034,276 - 14,035,202 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
OR5B17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381158,358,124 - 58,359,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1158,358,124 - 58,359,069 (-)EnsemblGRCh38hg38GRCh38
GRCh371158,125,597 - 58,126,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,882,174 - 57,883,118 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,882,173 - 57,883,118NCBI
Celera1155,484,027 - 55,484,971 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1154,473,365 - 54,474,309 (-)NCBIHuRef
CHM1_11157,991,564 - 57,992,508 (-)NCBICHM1_1
T2T-CHM13v2.01158,307,530 - 58,308,475 (-)NCBIT2T-CHM13v2.0
Or5b17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,003,213 - 220,004,157 (-)NCBIGRCr8
mRatBN7.21210,578,656 - 210,579,600 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,578,692 - 210,579,606 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01230,297,234 - 230,298,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,297,117 - 230,298,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01237,434,312 - 237,435,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1207,977,962 - 207,978,906 (-)NCBICelera
Cytogenetic Map1q43NCBI
OR5B31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,041,418 - 38,042,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,041,418 - 38,042,362 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1837,585,909 - 37,586,856 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01838,711,305 - 38,712,252 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1838,711,305 - 38,712,249 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,300,018 - 38,300,965 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,872,389 - 37,873,336 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,493,266 - 38,494,213 (+)NCBIUU_Cfam_GSD_1.0
LOC100623017
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,647,121 - 12,648,065 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,307,868 - 12,308,943 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Or5b113
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSMUST00000054687
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse

Markers in Region
UniSTS:495353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381913,364,567 - 13,365,618UniSTSGRCm38
MGSCv371913,439,057 - 13,440,108UniSTSGRCm37
Celera1914,034,213 - 14,035,264UniSTS
Cytogenetic Map19C1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000054687   ⟹   ENSMUSP00000061580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1913,341,994 - 13,342,920 (+)Ensembl
GRCm38.p6 Ensembl1913,364,630 - 13,365,556 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215096   ⟹   ENSMUSP00000149487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1913,339,600 - 13,345,418 (+)Ensembl
GRCm38.p6 Ensembl1913,362,236 - 13,368,054 (+)Ensembl
RefSeq Acc Id: NM_146691   ⟹   NP_666902
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391913,341,994 - 13,342,920 (+)NCBI
GRCm381913,364,630 - 13,365,556 (+)ENTREZGENE
MGSCv371913,439,120 - 13,440,046 (+)RGD
Celera1914,034,276 - 14,035,202 (+)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666902 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61067 (Get FASTA)   NCBI Sequence Viewer  
  AAP71831 (Get FASTA)   NCBI Sequence Viewer  
  EDL41504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000061580
  ENSMUSP00000061580.3
  ENSMUSP00000149487.2
Reference Protein Sequences
RefSeq Acc Id: NP_666902   ⟸   NM_146691
- UniProtKB: Q8VFW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000061580   ⟸   ENSMUST00000054687
RefSeq Acc Id: ENSMUSP00000149487   ⟸   ENSMUST00000215096
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VFW1-F1-model_v2 AlphaFold Q8VFW1 1-308 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031301 AgrOrtholog
Ensembl Genes ENSMUSG00000049015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054687 ENTREZGENE
  ENSMUST00000054687.3 UniProtKB/TrEMBL
  ENSMUST00000215096.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258686 UniProtKB/TrEMBL
MGD MGI:3031301 ENTREZGENE
NCBI Gene 258686 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5b113 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q8VFW1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5b113  olfactory receptor family 5 subfamily B member 113  Olfr1467  olfactory receptor 1467  Symbol and/or name change 5135510 APPROVED