Gm17227 (predicted gene 17227) - Rat Genome Database

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Gene: Gm17227 (predicted gene 17227) Mus musculus
Analyze
Symbol: Gm17227
Name: predicted gene 17227
RGD ID: 5145976
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,275,050 - 7,281,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,275,023 - 7,281,893 (+)EnsemblGRCm39 Ensembl
GRCm38197,297,685 - 7,304,363 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,297,658 - 7,304,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,372,148 - 7,379,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera197,068,834 - 7,076,231 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm17227
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:166
Interacting mature miRNAs:176
Transcripts:ENSMUST00000166590, ENSMUST00000170286
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000166590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,275,099 - 7,281,715 (+)Ensembl
GRCm38.p6 Ensembl197,297,734 - 7,304,350 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,275,023 - 7,281,893 (+)Ensembl
GRCm38.p6 Ensembl197,297,658 - 7,304,528 (+)Ensembl
RefSeq Acc Id: NR_167747
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,275,050 - 7,281,728 (+)NCBI
GRCm38197,297,685 - 7,304,363 (+)NCBI
Sequence:
RefSeq Acc Id: NR_167892
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,275,050 - 7,281,728 (+)NCBI
GRCm38197,297,685 - 7,304,363 (+)NCBI
Sequence:
Promoters
RGD ID:13678744
Promoter ID:EPDNEW_M23521
Type:initiation region
Name:AK133024_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38197,297,688 - 7,297,748EPDNEW
RGD ID:15095028
Promoter ID:EPDNEWNC_M2947
Type:initiation region
Name:Gm17227_1
Description:predicted gene 17227 [Source:MGI Symbol;Acc:MGI:4938054]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38197,297,688 - 7,297,748EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091558 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000166590 ENTREZGENE
  ENSMUST00000170286 ENTREZGENE
MGD MGI:4938054 ENTREZGENE
NCBI Gene Gm17227 ENTREZGENE
PhenoGen Gm17227 PhenoGen
RNAcentral URS0001BBE37F RNACentral
  URS0001BBE5A4 RNACentral