Syt7 (synaptotagmin VII) - Rat Genome Database
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Gene: Syt7 (synaptotagmin VII) Mus musculus
Analyze
Symbol: Syt7
Name: synaptotagmin VII
RGD ID: 62305
MGI Page MGI
Description: Exhibits SNARE binding activity; calmodulin binding activity; and phospholipid binding activity. Involved in several processes, including calcium-ion regulated exocytosis; regulation of secretion by cell; and regulation of vesicle-mediated transport. Localizes to several cellular components, including GABA-ergic synapse; cytoplasmic vesicle; and glutamatergic synapse. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human SYT7 (synaptotagmin 7); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-sulfonyldiphenol; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI851541; B230112P13Rik; RIKEN cDNA B230112P13 gene; synaptotagmin 7; synaptotagmin-7; sytVII
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,366,142 - 10,430,545 (+)NCBIGRCm39mm39
GRCm39 Ensembl1910,366,454 - 10,430,544 (+)Ensembl
GRCm381910,388,802 - 10,453,181 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,389,090 - 10,453,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,463,580 - 10,527,671 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,456,528 - 10,515,489 (+)NCBImm8
Celera1911,085,012 - 11,149,518 (+)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11751263   PMID:12071850   PMID:12477932   PMID:12860971   PMID:12925704   PMID:14532108   PMID:14681479  
PMID:15178804   PMID:15226824   PMID:16141072   PMID:16141073   PMID:16641243   PMID:16982801   PMID:17237398   PMID:17720139   PMID:18308932   PMID:18308933   PMID:18308938   PMID:18539119  
PMID:18629000   PMID:19171650   PMID:19501082   PMID:20473299   PMID:20824061   PMID:20926654   PMID:20956309   PMID:20978738   PMID:21041449   PMID:21424898   PMID:21482754   PMID:21576241  
PMID:21677750   PMID:21873635   PMID:22046328   PMID:23961995   PMID:24267651   PMID:24569478   PMID:24687280   PMID:25165815   PMID:25422940   PMID:25860611   PMID:26216970   PMID:26245964  
PMID:26437117   PMID:26738595   PMID:27609773   PMID:28093473   PMID:28355182   PMID:28521135   PMID:28634551   PMID:28794184   PMID:29088700   PMID:29166601   PMID:29274147   PMID:29518331  
PMID:29593071   PMID:29771357   PMID:29802202   PMID:29925374   PMID:29957297   PMID:29983327   PMID:30429473   PMID:30733150   PMID:30773347   PMID:32041882   PMID:32325033   PMID:33229564  


Genomics

Comparative Map Data
Syt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,366,142 - 10,430,545 (+)NCBIGRCm39mm39
GRCm39 Ensembl1910,366,454 - 10,430,544 (+)Ensembl
GRCm381910,388,802 - 10,453,181 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,389,090 - 10,453,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,463,580 - 10,527,671 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,456,528 - 10,515,489 (+)NCBImm8
Celera1911,085,012 - 11,149,518 (+)NCBICelera
Cytogenetic Map19ANCBI
SYT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,515,313 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1161,513,714 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,513,714 - 61,588,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,281,186 - 61,348,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,039,361 - 61,104,874 (-)NCBINCBI36hg18NCBI36
Build 341161,039,361 - 61,104,874NCBI
Celera1158,618,148 - 58,683,697 (-)NCBI
Cytogenetic Map11q12.2NCBI
HuRef1157,608,716 - 57,651,861 (-)NCBIHuRef
CHM1_11161,164,220 - 61,231,379 (-)NCBICHM1_1
Syt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21207,031,369 - 207,093,787 (+)NCBI
Rnor_6.0 Ensembl1226,435,979 - 226,493,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01226,435,816 - 226,498,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,382,523 - 233,445,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,876,675 - 212,935,373 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11213,035,183 - 213,093,803NCBI
Celera1204,526,212 - 204,583,576 (+)NCBICelera
Cytogenetic Map1q43NCBI
Syt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,051,386 - 6,093,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBIChiLan1.0ChiLan1.0
SYT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11160,175,403 - 60,242,375 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,175,403 - 60,242,375 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,814,694 - 56,880,439 (-)NCBIMhudiblu_PPA_v0panPan3
SYT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,863,072 - 54,926,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,861,754 - 54,921,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,437,734 - 53,500,698 (+)NCBI
ROS_Cfam_1.01855,910,339 - 55,973,524 (+)NCBI
UMICH_Zoey_3.11854,970,585 - 55,033,491 (+)NCBI
UNSW_CanFamBas_1.01854,590,887 - 54,654,036 (+)NCBI
UU_Cfam_GSD_1.01855,472,658 - 55,535,641 (+)NCBI
Syt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_02440494711,385,101 - 11,444,169 (+)NCBI
SpeTri2.0NW_0049365811,516,199 - 1,557,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,947,925 - 10,012,521 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,947,962 - 10,012,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,513,096 - 9,563,737 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,267,591 - 12,333,181 (+)NCBI
ChlSab1.1 Ensembl112,267,685 - 12,333,185 (+)Ensembl
Syt7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926722,201 - 765,834 (+)NCBI

Position Markers
Syt7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19BUniSTS
cM Map19 UniSTS
AI851541  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381910,452,802 - 10,452,910UniSTSGRCm38
MGSCv371910,527,292 - 10,527,400UniSTSGRCm37
Celera1911,149,139 - 11,149,247UniSTS
Cytogenetic Map19BUniSTS
Whitehead/MRC_RH19113.99UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19981005343810202Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19932831543328421Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)191000000020000000Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7152
Count of miRNA genes:766
Interacting mature miRNAs:1028
Transcripts:ENSMUST00000073899, ENSMUST00000076968, ENSMUST00000169121
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001373944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB026804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB075900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB075901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073899   ⟹   ENSMUSP00000073560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,090 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000076968   ⟹   ENSMUSP00000076234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,431 - 10,453,180 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169121   ⟹   ENSMUSP00000127973
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,431 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223586   ⟹   ENSMUSP00000153482
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224135   ⟹   ENSMUSP00000153132
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225019
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,431 - 10,421,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225452   ⟹   ENSMUSP00000153110
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225861
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,430 - 10,439,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235303   ⟹   ENSMUSP00000158202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235479   ⟹   ENSMUSP00000157682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,477 - 10,448,998 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,435,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235717
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,404,018 - 10,435,667 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235784   ⟹   ENSMUSP00000158359
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237366   ⟹   ENSMUSP00000157495
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237745   ⟹   ENSMUSP00000157394
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1910,389,483 - 10,448,444 (+)Ensembl
RefSeq Acc Id: NM_001373944   ⟹   NP_001360873
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,387 - 10,428,981 (+)NCBI
GRCm381910,389,023 - 10,451,617 (+)NCBI
RefSeq Acc Id: NM_018801   ⟹   NP_061271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,454 - 10,430,545 (+)NCBI
GRCm381910,389,090 - 10,453,181 (+)NCBI
MGSCv371910,463,580 - 10,527,671 (+)RGD
Celera1911,085,012 - 11,149,518 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_173067   ⟹   NP_775090
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,454 - 10,430,545 (+)NCBI
GRCm381910,389,090 - 10,453,181 (+)NCBI
MGSCv371910,463,580 - 10,527,671 (+)RGD
Celera1911,085,012 - 11,149,518 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_173068   ⟹   NP_775091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,454 - 10,430,545 (+)NCBI
GRCm381910,389,090 - 10,453,181 (+)NCBI
MGSCv371910,463,580 - 10,527,671 (+)RGD
Celera1911,085,012 - 11,149,518 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527204   ⟹   XP_006527267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,142 - 10,430,544 (+)NCBI
GRCm381910,388,802 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318252   ⟹   XP_017173741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
GRCm381910,389,521 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318253   ⟹   XP_017173742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
GRCm381910,389,521 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318255   ⟹   XP_017173744
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
GRCm381910,389,521 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318257   ⟹   XP_017173746
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
GRCm381910,389,521 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250994   ⟹   XP_030106854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
GRCm381910,389,521 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250995   ⟹   XP_030106855
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,150 - 10,430,544 (+)NCBI
GRCm381910,388,902 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250996   ⟹   XP_030106856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,400,394 - 10,430,544 (+)NCBI
GRCm381910,423,029 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250997   ⟹   XP_030106857
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,647 - 10,430,544 (+)NCBI
GRCm381910,388,924 - 10,453,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161637   ⟹   XP_036017530
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,366,885 - 10,430,544 (+)NCBI
RefSeq Acc Id: XM_036161638   ⟹   XP_036017531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391910,390,736 - 10,430,544 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_775090   ⟸   NM_173067
- Peptide Label: isoform beta
- UniProtKB: Q9R0N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_775091   ⟸   NM_173068
- Peptide Label: isoform gamma
- UniProtKB: Q9R0N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_061271   ⟸   NM_018801
- Peptide Label: isoform alpha
- UniProtKB: Q9R0N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527267   ⟸   XM_006527204
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017173744   ⟸   XM_017318255
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017173741   ⟸   XM_017318252
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017173742   ⟸   XM_017318253
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017173746   ⟸   XM_017318257
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_030106855   ⟸   XM_030250995
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030106857   ⟸   XM_030250997
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030106854   ⟸   XM_030250994
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030106856   ⟸   XM_030250996
- Peptide Label: isoform X8
RefSeq Acc Id: NP_001360873   ⟸   NM_001373944
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000153482   ⟸   ENSMUST00000223586
RefSeq Acc Id: ENSMUSP00000157495   ⟸   ENSMUST00000237366
RefSeq Acc Id: ENSMUSP00000157394   ⟸   ENSMUST00000237745
RefSeq Acc Id: ENSMUSP00000073560   ⟸   ENSMUST00000073899
RefSeq Acc Id: ENSMUSP00000153110   ⟸   ENSMUST00000225452
RefSeq Acc Id: ENSMUSP00000153132   ⟸   ENSMUST00000224135
RefSeq Acc Id: ENSMUSP00000127973   ⟸   ENSMUST00000169121
RefSeq Acc Id: ENSMUSP00000076234   ⟸   ENSMUST00000076968
RefSeq Acc Id: ENSMUSP00000158359   ⟸   ENSMUST00000235784
RefSeq Acc Id: ENSMUSP00000158202   ⟸   ENSMUST00000235303
RefSeq Acc Id: ENSMUSP00000157682   ⟸   ENSMUST00000235479
RefSeq Acc Id: XP_036017530   ⟸   XM_036161637
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036017531   ⟸   XM_036161638
- Peptide Label: isoform X6
Protein Domains
C2

Promoters
RGD ID:13678898
Promoter ID:EPDNEW_M23598
Type:initiation region
Name:Syt7_1
Description:Mus musculus synaptotagmin VII , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381910,389,023 - 10,389,083EPDNEW
RGD ID:6830449
Promoter ID:MM_KWN:26379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000025652,   NM_018801,   NM_173067,   NM_173068,   UC008GPO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361910,463,336 - 10,463,836 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859545 AgrOrtholog
Ensembl Genes ENSMUSG00000024743 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073560 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000076234 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000127973 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000153110 UniProtKB/TrEMBL
  ENSMUSP00000153132 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000153482 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000157394 UniProtKB/TrEMBL
  ENSMUSP00000157495 UniProtKB/TrEMBL
  ENSMUSP00000157682 UniProtKB/TrEMBL
  ENSMUSP00000158202 UniProtKB/TrEMBL
  ENSMUSP00000158359 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073899 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000076968 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000169121 UniProtKB/TrEMBL
  ENSMUST00000223586 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000224135 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000225452 UniProtKB/TrEMBL
  ENSMUST00000235303 UniProtKB/TrEMBL
  ENSMUST00000235479 UniProtKB/TrEMBL
  ENSMUST00000235784 UniProtKB/TrEMBL
  ENSMUST00000237366 UniProtKB/TrEMBL
  ENSMUST00000237745 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2A_Synaptotagmin-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2B_Synaptotagmin-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54525 UniProtKB/Swiss-Prot
MGD MGI:1859545 ENTREZGENE
NCBI Gene 54525 ENTREZGENE
PANTHER PTHR10024:SF358 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syt7 PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YCR9_MOUSE UniProtKB/TrEMBL
  A0A2C9F2C1_MOUSE UniProtKB/TrEMBL
  A0A494B8X6_MOUSE UniProtKB/TrEMBL
  A0A494B991_MOUSE UniProtKB/TrEMBL
  A0A494B9N4_MOUSE UniProtKB/TrEMBL
  A0A494BB44_MOUSE UniProtKB/TrEMBL
  A0A498WGM0_MOUSE UniProtKB/TrEMBL
  Q8BNQ9_MOUSE UniProtKB/TrEMBL
  Q9R0N7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A4QPF1 UniProtKB/Swiss-Prot
  E9PZA8 UniProtKB/Swiss-Prot
  Q0D2K7 UniProtKB/Swiss-Prot
  Q8CF95 UniProtKB/Swiss-Prot
  Q8CF96 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-31 Syt7  synaptotagmin VII  B230112P13Rik  RIKEN cDNA B230112P13 gene  Data Merged 737654 PROVISIONAL