Mir496b (microRNA 496b) - Rat Genome Database

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Pathways
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Gene: Mir496b (microRNA 496b) Mus musculus
Analyze
Symbol: Mir496b
Name: microRNA 496b
RGD ID: 9603810
MGI Page MGI
Description: Involved in energy homeostasis. Is expressed in forebrain.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm28028; mmu-mir-496b
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391916,292,256 - 16,292,368 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1916,292,256 - 16,292,368 (-)EnsemblGRCm39 Ensembl
GRCm381916,314,892 - 16,315,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1916,314,892 - 16,315,004 (-)EnsemblGRCm38mm10GRCm38
Celera1916,968,764 - 16,968,876 (-)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:22319597   PMID:24614228   PMID:25124681  


Genomics

Variants

.
Variants in Mir496b
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:7750
Count of gene targets:4214
Count of transcripts:6517
Interacting mature miRNAs:mmu-miR-496b
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_105832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000184935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1916,292,256 - 16,292,368 (-)Ensembl
GRCm38.p6 Ensembl1916,314,892 - 16,315,004 (-)Ensembl
RefSeq Acc Id: NR_105832
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391916,292,256 - 16,292,368 (-)NCBI
GRCm381916,314,892 - 16,315,004 (-)NCBI
Celera1916,968,764 - 16,968,876 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098718 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000184935 ENTREZGENE
MGD MGI:5531410 ENTREZGENE
miRBase MI0021942 ENTREZGENE
NCBI Gene Mir496b ENTREZGENE
PhenoGen Mir496b PhenoGen
RNAcentral URS000075B1CA RNACentral
  URS000075E932 RNACentral