Gm5513 (predicted pseudogene 5513) - Rat Genome Database

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Gene: Gm5513 (predicted pseudogene 5513) Mus musculus
Analyze
Symbol: Gm5513
Name: predicted pseudogene 5513
RGD ID: 1621168
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG433225
Related Functional Gene: Eif4a1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391914,936,366 - 14,938,146 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1914,936,913 - 14,938,130 (-)EnsemblGRCm39 Ensembl
GRCm381914,959,002 - 14,960,782 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1914,959,549 - 14,960,766 (-)EnsemblGRCm38mm10GRCm38
MGSCv371915,033,492 - 15,035,272 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361915,025,992 - 15,027,801 (-)NCBIMGSCv36mm8
Celera1915,618,970 - 15,620,750 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map1910.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm5513
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:167
Interacting mature miRNAs:173
Transcripts:ENSMUST00000072982
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_011867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000072982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1914,936,913 - 14,938,130 (-)Ensembl
GRCm38.p6 Ensembl1914,959,549 - 14,960,766 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000063586 Ensembl
MGD MGI:3645437 ENTREZGENE
NCBI Gene 433225 ENTREZGENE
PhenoGen Gm5513 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm5513  predicted pseudogene 5513  Gm5513  predicted gene 5513  Symbol and/or name change 5135510 APPROVED