Ccdc87 (coiled-coil domain containing 87) - Rat Genome Database

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Gene: Ccdc87 (coiled-coil domain containing 87) Mus musculus
Analyze
Symbol: Ccdc87
Name: coiled-coil domain containing 87
RGD ID: 1620399
MGI Page MGI
Description: Involved in positive regulation of acrosome reaction and positive regulation of fertilization. Orthologous to human CCDC87 (coiled-coil domain containing 87); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; ethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4931419P11Rik; coiled-coil domain-containing protein 87
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,889,394 - 4,892,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl194,889,394 - 4,892,556 (+)Ensembl
GRCm38194,839,366 - 4,842,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,839,366 - 4,842,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,839,366 - 4,842,528 (+)NCBIGRCm37mm9NCBIm37
MGSCv36194,839,415 - 4,842,163 (+)NCBImm8
Celera194,710,421 - 4,713,583 (+)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:29733332   PMID:32325033  


Genomics

Comparative Map Data
Ccdc87
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,889,394 - 4,892,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl194,889,394 - 4,892,556 (+)Ensembl
GRCm38194,839,366 - 4,842,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,839,366 - 4,842,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,839,366 - 4,842,528 (+)NCBIGRCm37mm9NCBIm37
MGSCv36194,839,415 - 4,842,163 (+)NCBImm8
Celera194,710,421 - 4,713,583 (+)NCBICelera
Cytogenetic Map19ANCBI
CCDC87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,590,176 - 66,593,063 (-)EnsemblGRCh38hg38GRCh38
GRCh381166,590,176 - 66,593,063 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,357,647 - 66,360,534 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,114,216 - 66,117,130 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map11q13.2NCBI
HuRef1162,685,282 - 62,688,197 (-)NCBIHuRef
CHM1_11166,241,371 - 66,244,285 (-)NCBICHM1_1
Ccdc87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,135,021 - 202,137,717 (+)NCBI
Rnor_6.0 Ensembl1220,096,422 - 220,099,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,096,478 - 220,099,174 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,027,475 - 227,030,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,451,155 - 207,453,851 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1199,675,524 - 199,678,217 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ccdc87
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542218,772,869 - 18,775,548 (+)NCBIChiLan1.0ChiLan1.0
CCDC87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11165,270,801 - 65,273,720 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01161,946,954 - 61,949,840 (-)NCBIMhudiblu_PPA_v0panPan3
CCDC87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,759,378 - 50,762,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,759,436 - 50,762,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,368,112 - 49,370,929 (+)NCBI
ROS_Cfam_1.01851,790,913 - 51,793,730 (+)NCBI
UMICH_Zoey_3.11850,892,297 - 50,895,114 (+)NCBI
UNSW_CanFamBas_1.01850,472,130 - 50,474,948 (+)NCBI
UU_Cfam_GSD_1.01851,261,982 - 51,264,800 (+)NCBI
Ccdc87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,562,699 - 6,565,919 (+)NCBI
SpeTri2.0NW_0049365993,005,067 - 3,008,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,833,464 - 5,836,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,833,431 - 5,838,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,863,943 - 4,867,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC87
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,686,514 - 7,689,390 (+)NCBI
ChlSab1.1 Ensembl17,686,575 - 7,689,061 (+)Ensembl
Vero_WHO_p1.0NW_023666038104,970,062 - 104,972,985 (+)NCBI
Ccdc87
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,815,664 - 19,818,796 (+)NCBI

Position Markers
BB287151  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38194,841,980 - 4,842,101UniSTSGRCm38
MGSCv37194,841,980 - 4,842,101UniSTSGRCm37
Celera194,713,035 - 4,713,156UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH1959.3UniSTS
PMC16025P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38194,838,839 - 4,839,235UniSTSGRCm38
MGSCv37194,838,839 - 4,839,235UniSTSGRCm37
Celera194,709,894 - 4,710,290UniSTS
Cytogenetic Map19AUniSTS
cM Map194.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:135
Interacting mature miRNAs:136
Transcripts:ENSMUST00000088653
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000088653   ⟹   ENSMUSP00000086028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl194,839,366 - 4,842,528 (+)Ensembl
RefSeq Acc Id: NM_207268   ⟹   NP_997151
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,889,394 - 4,892,556 (+)NCBI
GRCm38194,839,366 - 4,842,528 (+)ENTREZGENE
MGSCv37194,839,366 - 4,842,528 (+)RGD
Celera194,710,421 - 4,713,583 (+)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_997151 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI45661 (Get FASTA)   NCBI Sequence Viewer  
  BAC26655 (Get FASTA)   NCBI Sequence Viewer  
  EDL33072 (Get FASTA)   NCBI Sequence Viewer  
  Q8CDL9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_997151   ⟸   NM_207268
- UniProtKB: Q8CDL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000086028   ⟸   ENSMUST00000088653

Promoters
RGD ID:6829897
Promoter ID:MM_KWN:26031
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_016892,   NM_207268
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36194,838,999 - 4,839,499 (-)MPROMDB
RGD ID:13678458
Promoter ID:EPDNEW_M23378
Type:initiation region
Name:Ccdc87_1
Description:Mus musculus coiled-coil domain containing 87 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38194,839,453 - 4,839,513EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3026882 AgrOrtholog
Ensembl Genes ENSMUSG00000067872 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000086028 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000088653 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CCDC87 UniProtKB/Swiss-Prot
KEGG Report mmu:399599 UniProtKB/Swiss-Prot
MGD MGI:3026882 ENTREZGENE
NCBI Gene 399599 ENTREZGENE
PANTHER PTHR16078 UniProtKB/Swiss-Prot
PhenoGen Ccdc87 PhenoGen
UniProt CCD87_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6H5W2 UniProtKB/Swiss-Prot