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Gene: Lbhd1 (LBH domain containing 1) Mus musculus

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Symbol:

Lbhd1

Name:

LBH domain containing 1

RGD ID:

9675563

MGI Page

MGI

Description:

Orthologous to human LBHD1 (LBH domain containing 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Gm21743; LBH domain-containing protein 1; uncharacterized protein LOC102308570

RGD Orthologs

Human

Bonobo

Green Monkey

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	8,861,242 - 8,868,123 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	8,861,096 - 8,869,991 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	8,883,878 - 8,890,759 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	8,883,732 - 8,892,627 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	19	8,644,480 - 8,651,361 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

intellectual disability (ISO)

Larsen-like syndrome B3GAT3 type (ISO)

leukocyte adhesion deficiency 3 (ISO)

mitochondrial complex III deficiency nuclear type 9 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

acrylamide (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (ISO)

chloropicrin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

diazinon (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

iron dichloride (ISO)

methyl methanesulfonate (ISO)

ozone (EXP,ISO)

selenium atom (ISO)

troglitazone (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14610273	PMID:18799693	PMID:21873635

Genomics

Comparative Map Data

Lbhd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	8,861,242 - 8,868,123 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	8,861,096 - 8,869,991 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	8,883,878 - 8,890,759 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	8,883,732 - 8,892,627 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	19	8,644,480 - 8,651,361 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

LBHD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	62,662,817 - 62,672,267 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	62,662,817 - 62,672,267 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	62,430,289 - 62,439,739 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	62,186,865 - 62,195,817 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	59,759,867 - 59,768,820 (-)	NCBI		Celera
Cytogenetic Map	11	q12.3	NCBI
HuRef	11	58,759,145 - 58,768,107 (-)	NCBI		HuRef
CHM1_1	11	62,313,381 - 62,322,352 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	62,652,235 - 62,661,685 (-)	NCBI		T2T-CHM13v2.0

LBHD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	63,893,982 - 63,897,251 (-)	NCBI		NHGRI_mPanPan1-v2

LBHD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,236,763 - 11,239,586 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	108,570,429 - 108,573,513 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Lbhd1
225 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	110
Count of miRNA genes:	108
Interacting mature miRNAs:	110
Transcripts:	ENSMUST00000177826
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5313326	39313470	Mouse
25394536	Skmw86_m	skeletal muscle weight 86, TA (mouse)					19	5064817	8957825	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001286103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI872942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK619869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000187504 ⟹ ENSMUSP00000139692

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	8,861,096 - 8,869,991 (+)	Ensembl
GRCm38.p6 Ensembl	19	8,883,732 - 8,892,627 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000189165

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	8,861,288 - 8,864,405 (+)	Ensembl
GRCm38.p6 Ensembl	19	8,883,924 - 8,887,041 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000190530

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	8,866,642 - 8,868,022 (+)	Ensembl
GRCm38.p6 Ensembl	19	8,889,278 - 8,890,658 (+)	Ensembl

RefSeq Acc Id:

NM_001286103 ⟹ NP_001273032

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	8,861,242 - 8,868,123 (+)	NCBI
GRCm38	19	8,883,878 - 8,890,759 (+)	NCBI
Celera	19	8,644,480 - 8,651,361 (+)	NCBI

Sequence:

show sequence

ACAGGGACTTGACCTGGAATCCAACCATCTCCACGTTTACAGAGTTACTATCATGGCCCTTGTG
CCAGAGAGTAGCAAGGATGGATCTTGGTCTGGAGATAACCCAGACTCTCCATGGCATCCAGAAA
GTCCTCAGTTGGCCAACCCCCTTTCAAAAAACAGAGAAGAGACTGGCAGATGTGAAGATCATCA
GGATGTTGAGGTGTCTCAAAAGCCCCGCCTGCCCTCTATTGTGGTAGAGGCCTCAGAGGGGAGT
GAGGAAGACCAGGAAGACCACCAGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAG
AAGACGCAGAAGCTTTCTTCCAGGATCAAAGTGAAGAGCCAGGTTGGGCCTGGATCCCACAGGA
TCCCACATCTCCTTTAAGAACAATAAACCCTGGACTTGGCTGGGGTCAAGAACAAGATGCCTTC
TGGATTCCTGAAGATACAGAGGGTCAGGAAACTCCCAATCTCTGTCCTCTTTGGGACCCAACAG
GGTCCTGCATCTATAGAACACGATTTATGGAATATCCCCATTTCCCACCTCTCAGTACTTTTGG
GGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACG
CCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCG
TCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCC
GACTTGCCCAGAAAGAAAAAGCAGCCATGGAAGTGGAAGCCCCCTCCAAGTCAACCAGGACTAG
TCAGCCACAGCCCAAGCAACAAAAGAAGATAAAAGCTCCCCAGGACGTAGCTATGGAGGATCTT
GAAGATAAGAGCTAAAATCCCTGCCTCTTCTACCAGAAGATGGTCAACAGCACTGAGAAAGATT
TGGAGGAACTTTGGAAAAAATATTAGCATATTTCACTTTCCTAGACACCTCTTCTACAGCGGAC
CCTGACCTCCCCTGGAGGTGTATATTGGGACCGAAGAGGACACAGAGAAAGACTGGAGGGCCAC
CTCTAGCAGTCAACTCCTTTTGTAATAAAGCTTTAGTGCGTTCACCGTGTGGGATGAAGTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001273032	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000139692
	ENSMUSP00000139692.2

RefSeq Acc Id:

NP_001273032 ⟸ NM_001286103

- UniProtKB:

A0A087WPA0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALVPESSKDGSWSGDNPDSPWHPESPQLANPLSKNREETGRCEDHQDVEVSQKPRLPSIVVEA
SEGSEEDQEDHQWPHEELLVLTDGEEDAEAFFQDQSEEPGWAWIPQDPTSPLRTINPGLGWGQE
QDAFWIPEDTEGQETPNLCPLWDPTGSCIYRTRFMEYPHFPPLSTFGGAEEEVVQAPQGIKQGS
ATETPGGRGCDRRRADYEAPPQEAGVQCSCQHHAVWEEAQETLAADPTCPERKSSHGSGSPLQV
NQD

hide sequence

Ensembl Acc Id:

ENSMUSP00000139692 ⟸ ENSMUST00000187504

Protein Domains

LBH

Promoters

RGD ID:

13678838

Promoter ID:

EPDNEW_M23568

Type:

initiation region

Name:

Lbhd1_1

Description:

Mus musculus LBH domain containing 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	8,883,888 - 8,883,948	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:5516029	AgrOrtholog
Ensembl Genes	ENSMUSG00000096740	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000187504	ENTREZGENE
	ENSMUST00000187504.7	UniProtKB/TrEMBL
InterPro	LBH_dom	UniProtKB/TrEMBL
	LBH_dom_prot	UniProtKB/TrEMBL
KEGG Report	mmu:102308570	UniProtKB/TrEMBL
MGD	MGI:5516029	ENTREZGENE
NCBI Gene	Lbhd1	ENTREZGENE
PANTHER	LBH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR14987	UniProtKB/TrEMBL
Pfam	Lbh	UniProtKB/TrEMBL
PhenoGen	Lbhd1	PhenoGen
UniProt	A0A087WPA0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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