Gm24453 (predicted gene, 24453) - Rat Genome Database

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Gene: Gm24453 (predicted gene, 24453) Mus musculus
Analyze
Symbol: Gm24453
Name: predicted gene, 24453
RGD ID: 15554282
MGI Page MGI
Description: ASSOCIATED WITH chromosome 6q24-q25 deletion syndrome (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115489082; small nucleolar RNA SNORD28
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,702,232 - 8,702,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,702,232 - 8,702,307 (+)EnsemblGRCm39 Ensembl
GRCm38198,724,868 - 8,724,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,724,868 - 8,724,943 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Gm24453
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,702,232 - 8,702,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,702,232 - 8,702,307 (+)EnsemblGRCm39 Ensembl
GRCm38198,724,868 - 8,724,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,724,868 - 8,724,943 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
SNORD28B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386156,378,750 - 156,378,824 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6156,378,750 - 156,378,824 (+)EnsemblGRCh38hg38GRCh38
GRCh376156,699,884 - 156,699,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q25.3NCBI
T2T-CHM13v2.06157,580,927 - 157,581,001 (+)NCBIT2T-CHM13v2.0
Snord28b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,049,557 - 215,049,634 (+)NCBIGRCr8
mRatBN7.21205,620,424 - 205,620,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,620,424 - 205,620,501 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1224,922,522 - 224,922,599 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q43NCBI

Variants

.
Variants in Gm24453
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:82
Interacting mature miRNAs:86
Transcripts:ENSMUST00000083346
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC025794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,702,232 - 8,702,307 (+)Ensembl
GRCm38.p6 Ensembl198,724,868 - 8,724,943 (+)Ensembl
RefSeq Acc Id: XR_004940302
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,702,232 - 8,702,307 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065280 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083346 ENTREZGENE
MGD MGI:5454230 ENTREZGENE
NCBI Gene LOC115489082 ENTREZGENE
PhenoGen Gm24453 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm24453  predicted gene, 24453  LOC115489082  small nucleolar RNA SNORD28  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115489082  small nucleolar RNA SNORD28  Gm24453  predicted gene, 24453  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm24453  predicted gene, 24453  LOC115489082  small nucleolar RNA SNORD28  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115489082  small nucleolar RNA SNORD28  Gm24453  predicted gene, 24453  Symbol and/or name change 5135510 APPROVED