Gm38656 (predicted gene, 38656) - Rat Genome Database

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Gene: Gm38656 (predicted gene, 38656) Mus musculus
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Symbol: Gm38656
Name: predicted gene, 38656
RGD ID: 10032107
MGI Page MGI
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ortholog); 17alpha-ethynylestradiol (ortholog); 17beta-estradiol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prostatic steroid-binding protein C1-like; secretoglobin family 1D member 2
RGD Orthologs
Human
Rat
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,162,589 - 9,164,383 (-)NCBIGRCm39GRCm39mm39
GRCm38199,185,225 - 9,187,019 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera198,943,738 - 8,945,532 (-)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm38656
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,162,589 - 9,164,383 (-)NCBIGRCm39GRCm39mm39
GRCm38199,185,225 - 9,187,019 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera198,943,738 - 8,945,532 (-)NCBICelera
Cytogenetic Map19ANCBI
SCGB1D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,242,239 - 62,244,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,242,239 - 62,244,812 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,009,711 - 62,012,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,766,300 - 61,768,856 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,766,301 - 61,768,853NCBI
Celera1159,339,186 - 59,341,742 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,338,125 - 58,340,681 (+)NCBIHuRef
CHM1_11161,892,602 - 61,895,158 (+)NCBICHM1_1
T2T-CHM13v2.01162,231,488 - 62,234,061 (+)NCBIT2T-CHM13v2.0
Scgb1d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,653,464 - 215,658,101 (-)NCBIGRCr8
mRatBN7.21206,228,546 - 206,233,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,228,778 - 206,231,785 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,611,671 - 214,614,659 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,662,352 - 221,665,341 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,357,369 - 214,360,358 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,591,848 - 225,601,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,591,969 - 225,594,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,544,484 - 232,553,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,016,491 - 212,019,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,174,920 - 212,177,910 (-)NCBI
Celera1203,729,576 - 203,732,565 (-)NCBICelera
Cytogenetic Map1q43NCBI
SCGB1D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,476,748 - 63,479,321 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,519,515 - 64,522,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,607,134 - 57,609,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,963,919 - 60,966,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,963,782 - 60,966,472 (+)Ensemblpanpan1.1panPan2
SCGB1D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,628,868 - 11,633,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,628,983 - 11,632,703 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,983,570 - 108,985,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Gm38656
68 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_011247423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_011247423   ⟹   XP_011245725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39199,162,589 - 9,164,383 (-)NCBI
GRCm38199,185,225 - 9,187,019 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_011245725 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_011245725   ⟸   XM_011247423
- Sequence:


Additional Information

Database Acc Id Source(s)
MGD MGI:5621541 ENTREZGENE
NCBI Gene Gm38656 ENTREZGENE
PhenoGen Gm38656 PhenoGen