SCGB1D2 (secretoglobin family 1D member 2) - Rat Genome Database

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Gene: SCGB1D2 (secretoglobin family 1D member 2) Chlorocebus sabaeus
Analyze
Symbol: SCGB1D2
Name: secretoglobin family 1D member 2
RGD ID: 18502609
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103234118; secretoglobin family 1D member 2-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,628,868 - 11,633,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,628,983 - 11,632,703 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,983,570 - 108,985,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
SCGB1D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,628,868 - 11,633,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,628,983 - 11,632,703 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,983,570 - 108,985,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SCGB1D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,242,239 - 62,244,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,242,239 - 62,244,812 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,009,711 - 62,012,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,766,300 - 61,768,856 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,766,301 - 61,768,853NCBI
Celera1159,339,186 - 59,341,742 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,338,125 - 58,340,681 (+)NCBIHuRef
CHM1_11161,892,602 - 61,895,158 (+)NCBICHM1_1
T2T-CHM13v2.01162,231,488 - 62,234,061 (+)NCBIT2T-CHM13v2.0
Gm38656
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,162,589 - 9,164,383 (-)NCBIGRCm39GRCm39mm39
GRCm38199,185,225 - 9,187,019 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera198,943,738 - 8,945,532 (-)NCBICelera
Cytogenetic Map19ANCBI
Scgb1d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,653,464 - 215,658,101 (-)NCBIGRCr8
mRatBN7.21206,228,546 - 206,233,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,228,778 - 206,231,785 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,611,671 - 214,614,659 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,662,352 - 221,665,341 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,357,369 - 214,360,358 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,591,848 - 225,601,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,591,969 - 225,594,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,544,484 - 232,553,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,016,491 - 212,019,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,174,920 - 212,177,910 (-)NCBI
Celera1203,729,576 - 203,732,565 (-)NCBICelera
Cytogenetic Map1q43NCBI
SCGB1D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,476,748 - 63,479,321 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,519,515 - 64,522,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,607,134 - 57,609,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,963,919 - 60,966,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,963,782 - 60,966,472 (+)Ensemblpanpan1.1panPan2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 3 12 3
Below cutoff 7 5 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000004565   ⟹   ENSCSAP00000002813
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl111,628,983 - 11,632,703 (-)Ensembl
RefSeq Acc Id: XM_037997355   ⟹   XP_037853283
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038108,983,570 - 108,985,200 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037853283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002813.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000002813   ⟸   ENSCSAT00000004565
RefSeq Acc Id: XP_037853283   ⟸   XM_037997355
- UniProtKB: A0A0D9R2H4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006525 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004565.1 UniProtKB/TrEMBL
InterPro Secretoglobin UniProtKB/TrEMBL
  Secretoglobin_sf UniProtKB/TrEMBL
KEGG Report csab:103234118 UniProtKB/TrEMBL
NCBI Gene LOC103234118 ENTREZGENE
PANTHER SECRETOGLOBIN FAMILY 1D UniProtKB/TrEMBL
  SECRETOGLOBIN FAMILY 1D MEMBER 2 UniProtKB/TrEMBL
Pfam Uteroglobin UniProtKB/TrEMBL
PROSITE SCGB UniProtKB/TrEMBL
Superfamily-SCOP SSF48201 UniProtKB/TrEMBL
UniProt A0A0D9R2H4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 SCGB1D2  secretoglobin family 1D member 2  LOC103234118  secretoglobin family 1D member 2-like  Symbol and/or name change 5135510 APPROVED