Rtn3 (reticulon 3) - Rat Genome Database

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Gene: Rtn3 (reticulon 3) Mus musculus
Analyze
Symbol: Rtn3
Name: reticulon 3
RGD ID: 1551155
MGI Page MGI
Description: Involved in endoplasmic reticulum tubular network formation. Is active in synapse. Is expressed in several structures, including genitourinary system; nervous system; olfactory epithelium; retina; and vibrissa. Orthologous to human RTN3 (reticulon 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW558451; MGC105197; Nsp-like II; reticulon-3; RTN3-A1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,403,260 - 7,460,656 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,403,266 - 7,460,646 (-)Ensembl
GRCm38197,425,895 - 7,483,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,425,901 - 7,483,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,500,391 - 7,557,779 (-)NCBIGRCm37mm9NCBIm37
MGSCv36197,492,945 - 7,550,333 (-)NCBImm8
Celera197,197,649 - 7,254,911 (-)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10331947   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11990451   PMID:12477932   PMID:12520002   PMID:12832288   PMID:12904583   PMID:14610273  
PMID:15102471   PMID:15350194   PMID:15489334   PMID:15782199   PMID:15946766   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16512683   PMID:17114649   PMID:17476306   PMID:17967808  
PMID:18287559   PMID:18799693   PMID:19284479   PMID:19521500   PMID:19665976   PMID:19681166   PMID:21119307   PMID:21267068   PMID:21677750   PMID:24005676   PMID:24262037   PMID:25319692  
PMID:25612671   PMID:26619807   PMID:28238655   PMID:28733667   PMID:29716941   PMID:30550785   PMID:30562941   PMID:30596517   PMID:32325033  


Genomics

Comparative Map Data
Rtn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,403,260 - 7,460,656 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,403,266 - 7,460,646 (-)Ensembl
GRCm38197,425,895 - 7,483,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,425,901 - 7,483,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,500,391 - 7,557,779 (-)NCBIGRCm37mm9NCBIm37
MGSCv36197,492,945 - 7,550,333 (-)NCBImm8
Celera197,197,649 - 7,254,911 (-)NCBICelera
Cytogenetic Map19ANCBI
RTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1163,681,446 - 63,759,891 (+)EnsemblGRCh38hg38GRCh38
GRCh381163,681,315 - 63,759,891 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371163,448,922 - 63,527,363 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,205,498 - 63,283,939 (+)NCBINCBI36hg18NCBI36
Build 341163,205,497 - 63,283,937NCBI
Celera1160,773,986 - 60,853,237 (+)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1159,778,651 - 59,857,054 (+)NCBIHuRef
CHM1_11163,331,936 - 63,410,394 (+)NCBICHM1_1
Rtn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21204,612,675 - 204,669,212 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1222,677,365 - 222,734,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01222,677,359 - 222,734,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01229,664,608 - 229,721,539 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,109,534 - 210,166,035 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11210,267,963 - 210,324,465 (-)NCBI
Celera1202,144,880 - 202,201,397 (-)NCBICelera
Cytogenetic Map1q43NCBI
Rtn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542221,289,652 - 21,358,865 (-)NCBIChiLan1.0ChiLan1.0
RTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11162,391,284 - 62,468,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,391,284 - 62,468,595 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01159,039,313 - 59,117,572 (+)NCBIMhudiblu_PPA_v0panPan3
RTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,239,893 - 53,298,020 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,239,914 - 53,297,984 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,847,678 - 51,905,278 (-)NCBI
ROS_Cfam_1.01854,286,179 - 54,343,796 (-)NCBI
UMICH_Zoey_3.11853,387,735 - 53,445,261 (-)NCBI
UNSW_CanFamBas_1.01852,963,486 - 53,020,402 (-)NCBI
UU_Cfam_GSD_1.01853,749,031 - 53,806,406 (-)NCBI
Rtn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,922,051 - 8,987,765 (-)NCBI
SpeTri2.0NW_0049365995,364,406 - 5,430,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.128,291,750 - 8,354,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,558,481 - 7,714,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,485,943 - 10,559,725 (-)NCBI
Vero_WHO_p1.0NW_023666038107,829,967 - 107,904,046 (-)NCBI
Rtn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476722,498,849 - 22,558,990 (-)NCBI

Position Markers
AI848741  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,425,707 - 7,425,841UniSTSGRCm38
GRCm38X157,364,995 - 157,365,130UniSTSGRCm38
MGSCv37X153,802,927 - 153,803,062UniSTSGRCm37
MGSCv37197,500,197 - 7,500,331UniSTSGRCm37
Celera197,197,455 - 7,197,589UniSTS
CeleraX140,617,055 - 140,617,190UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map19AUniSTS
cM MapX65.4UniSTS
Whitehead/MRC_RH1932.02UniSTS
AW558451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,426,269 - 7,426,359UniSTSGRCm38
MGSCv37197,500,759 - 7,500,849UniSTSGRCm37
Celera197,198,017 - 7,198,107UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH1931.0UniSTS
UniSTS:237880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,456,191 - 7,456,516UniSTSGRCm38
MGSCv37197,530,681 - 7,531,006UniSTSGRCm37
Celera197,227,807 - 7,228,132UniSTS
Cytogenetic Map19AUniSTS
Rtn3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19AUniSTS
cM Map195.32UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950147898980461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2908
Count of miRNA genes:477
Interacting mature miRNAs:559
Transcripts:ENSMUST00000025667, ENSMUST00000065304, ENSMUST00000088169, ENSMUST00000088171
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001003934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB046114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC129188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF195940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY164700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY427822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY507126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY507127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY750849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI729783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK001796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY295849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025667   ⟹   ENSMUSP00000025667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl197,425,901 - 7,483,281 (-)Ensembl
RefSeq Acc Id: ENSMUST00000065304   ⟹   ENSMUSP00000065810
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl197,425,901 - 7,483,272 (-)Ensembl
RefSeq Acc Id: ENSMUST00000088169   ⟹   ENSMUSP00000085494
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl197,425,901 - 7,483,202 (-)Ensembl
RefSeq Acc Id: ENSMUST00000088171   ⟹   ENSMUSP00000085496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl197,425,901 - 7,483,272 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235593   ⟹   ENSMUSP00000158024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl197,427,543 - 7,483,267 (-)Ensembl
RefSeq Acc Id: NM_001003933   ⟹   NP_001003933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,260 - 7,460,656 (-)NCBI
GRCm38197,425,895 - 7,483,291 (-)NCBI
MGSCv37197,500,391 - 7,557,779 (-)RGD
Celera197,197,643 - 7,254,913 (-)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001003934   ⟹   NP_001003934
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,260 - 7,460,656 (-)NCBI
GRCm38197,425,895 - 7,483,291 (-)NCBI
MGSCv37197,500,391 - 7,557,779 (-)RGD
Celera197,197,643 - 7,254,913 (-)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001271486   ⟹   NP_001258415
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,260 - 7,460,656 (-)NCBI
GRCm38197,425,895 - 7,483,291 (-)NCBI
Celera197,197,643 - 7,254,913 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271487   ⟹   NP_001258416
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,260 - 7,460,656 (-)NCBI
GRCm38197,425,895 - 7,483,291 (-)NCBI
Celera197,197,643 - 7,254,913 (-)NCBI
Sequence:
RefSeq Acc Id: NM_053076   ⟹   NP_444306
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,260 - 7,460,656 (-)NCBI
GRCm38197,425,895 - 7,483,291 (-)NCBI
MGSCv37197,500,391 - 7,557,779 (-)RGD
Celera197,197,643 - 7,254,913 (-)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017318088   ⟹   XP_017173577
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,403,263 - 7,418,966 (-)NCBI
GRCm38197,425,898 - 7,441,601 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003933 (Get FASTA)   NCBI Sequence Viewer  
  NP_001003934 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258416 (Get FASTA)   NCBI Sequence Viewer  
  NP_444306 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173577 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG31360 (Get FASTA)   NCBI Sequence Viewer  
  AAH14697 (Get FASTA)   NCBI Sequence Viewer  
  AAH36717 (Get FASTA)   NCBI Sequence Viewer  
  AAH79882 (Get FASTA)   NCBI Sequence Viewer  
  AAP47278 (Get FASTA)   NCBI Sequence Viewer  
  AAR08193 (Get FASTA)   NCBI Sequence Viewer  
  AAR98631 (Get FASTA)   NCBI Sequence Viewer  
  AAR98632 (Get FASTA)   NCBI Sequence Viewer  
  AAU81931 (Get FASTA)   NCBI Sequence Viewer  
  BAB62070 (Get FASTA)   NCBI Sequence Viewer  
  BAC27708 (Get FASTA)   NCBI Sequence Viewer  
  BAC29625 (Get FASTA)   NCBI Sequence Viewer  
  BAC33952 (Get FASTA)   NCBI Sequence Viewer  
  BAC35739 (Get FASTA)   NCBI Sequence Viewer  
  BAC36028 (Get FASTA)   NCBI Sequence Viewer  
  BAC40493 (Get FASTA)   NCBI Sequence Viewer  
  BAE27220 (Get FASTA)   NCBI Sequence Viewer  
  BAE28664 (Get FASTA)   NCBI Sequence Viewer  
  BAE28699 (Get FASTA)   NCBI Sequence Viewer  
  BAE38336 (Get FASTA)   NCBI Sequence Viewer  
  DAA01968 (Get FASTA)   NCBI Sequence Viewer  
  EDL33306 (Get FASTA)   NCBI Sequence Viewer  
  EDL33307 (Get FASTA)   NCBI Sequence Viewer  
  EDL33308 (Get FASTA)   NCBI Sequence Viewer  
  EDL33309 (Get FASTA)   NCBI Sequence Viewer  
  Q9ES97 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003933   ⟸   NM_001003933
- Peptide Label: isoform 2
- UniProtKB: Q9ES97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001003934   ⟸   NM_001003934
- Peptide Label: isoform 1
- UniProtKB: Q9ES97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_444306   ⟸   NM_053076
- Peptide Label: isoform 4
- UniProtKB: Q9ES97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258416   ⟸   NM_001271487
- Peptide Label: isoform 6
- UniProtKB: Q9ES97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258415   ⟸   NM_001271486
- Peptide Label: isoform 5
- UniProtKB: Q9ES97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017173577   ⟸   XM_017318088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000065810   ⟸   ENSMUST00000065304
RefSeq Acc Id: ENSMUSP00000085496   ⟸   ENSMUST00000088171
RefSeq Acc Id: ENSMUSP00000085494   ⟸   ENSMUST00000088169
RefSeq Acc Id: ENSMUSP00000025667   ⟸   ENSMUST00000025667
RefSeq Acc Id: ENSMUSP00000158024   ⟸   ENSMUST00000235593
Protein Domains
Reticulon

Promoters
RGD ID:13678754
Promoter ID:EPDNEW_M23526
Type:initiation region
Name:Rtn3_1
Description:Mus musculus reticulon 3 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38197,483,249 - 7,483,309EPDNEW
RGD ID:6830383
Promoter ID:MM_KWN:26265
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000025667,   NM_001003933,   NM_001003934,   UC008GLC.1,   UC008GLE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36197,557,306 - 7,558,162 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1339970 AgrOrtholog
Ensembl Genes ENSMUSG00000024758 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000025667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000065810 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000085494 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000085496 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000158024 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000065304 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000088169 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000088171 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000235593 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Reticulon UniProtKB/Swiss-Prot
KEGG Report mmu:20168 UniProtKB/Swiss-Prot
MGD MGI:1339970 ENTREZGENE
NCBI Gene 20168 ENTREZGENE
Pfam Reticulon UniProtKB/Swiss-Prot
PhenoGen Rtn3 PhenoGen
PROSITE RETICULON UniProtKB/Swiss-Prot
UniProt Q8C6L4_MOUSE UniProtKB/TrEMBL
  Q9ES97 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UF62 UniProtKB/Swiss-Prot
  Q544J1 UniProtKB/Swiss-Prot
  Q68FE4 UniProtKB/Swiss-Prot
  Q6IM69 UniProtKB/Swiss-Prot
  Q6R8K6 UniProtKB/Swiss-Prot
  Q6R8K7 UniProtKB/Swiss-Prot
  Q6T929 UniProtKB/Swiss-Prot
  Q8C6D5 UniProtKB/Swiss-Prot
  Q8CCU2 UniProtKB/Swiss-Prot