Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neoplasms, Second Primary | | ISO | RAD9A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21991345 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neoplasms, Second Primary | | ISO | RAD9A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21991345 | |
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# | Reference Title | Reference Citation |
1. | MGDs mouse GO annotations | MGD data from the GO Consortium |
2. | MGD IEA | MGD IEA |
3. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9733772 | PMID:9766521 | PMID:10349636 | PMID:10871397 | PMID:11042159 | PMID:11058134 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:12628935 | PMID:14500360 |
PMID:14610273 | PMID:15282322 | PMID:15489334 | PMID:15705893 | PMID:15782199 | PMID:15983387 | PMID:16141072 | PMID:16141073 | PMID:16365875 | PMID:16479004 | PMID:18316588 | PMID:18632607 |
PMID:18769057 | PMID:18799693 | PMID:18809378 | PMID:18842633 | PMID:20021694 | PMID:20081369 | PMID:20305300 | PMID:20729201 | PMID:21267068 | PMID:21321020 | PMID:21677750 | PMID:21873635 |
PMID:22034047 | PMID:22560297 | PMID:23066031 | PMID:23468651 | PMID:23788429 | PMID:24194600 | PMID:24803591 | PMID:25234738 | PMID:26667770 | PMID:27671873 | PMID:27739607 | PMID:27861152 |
PMID:30154445 | PMID:30157441 | PMID:31609468 | PMID:34746147 |
Rad9a (Mus musculus - house mouse) |
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RAD9A (Homo sapiens - human) |
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Rad9a (Rattus norvegicus - Norway rat) |
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Rad9a (Chinchilla lanigera - long-tailed chinchilla) |
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RAD9A (Pan paniscus - bonobo/pygmy chimpanzee) |
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RAD9A (Canis lupus familiaris - dog) |
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Rad9a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RAD9A (Sus scrofa - pig) |
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RAD9A (Chlorocebus sabaeus - green monkey) |
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Rad9a (Heterocephalus glaber - naked mole-rat) |
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Variants in Rad9a
150 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_011237 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XR_879420 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC109138 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC140073 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF045662 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF045663 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469741 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469742 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469743 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469744 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469745 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469746 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469747 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469748 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469749 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469750 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469751 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469752 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF469753 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK134293 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK138973 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK165833 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK179097 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK186361 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK219932 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC082556 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466612 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000025740 ⟹ ENSMUSP00000025740 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000235367 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000235742 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000237278 ⟹ ENSMUSP00000158136 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000237467 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000237723 ⟹ ENSMUSP00000157774 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000237923 ⟹ ENSMUSP00000158283 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000237963 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_011237 ⟹ NP_035367 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_879420 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_035367 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAC77364 | (Get FASTA) | NCBI Sequence Viewer |
AAC77365 | (Get FASTA) | NCBI Sequence Viewer | |
AAH82556 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82387 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82388 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82389 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82390 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82391 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82392 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82393 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82448 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82449 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82450 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82451 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82452 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82453 | (Get FASTA) | NCBI Sequence Viewer | |
AAL82454 | (Get FASTA) | NCBI Sequence Viewer | |
BAE22086 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33034 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33035 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000025740 | ||
ENSMUSP00000025740.7 | |||
ENSMUSP00000157774.2 | |||
ENSMUSP00000158136.2 | |||
ENSMUSP00000158283.2 | |||
GenBank Protein | Q9Z0F6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_035367 ⟸ NM_011237 |
- UniProtKB: | Q8QZZ3 (UniProtKB/Swiss-Prot), Q9Z0F6 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000158136 ⟸ ENSMUST00000237278 |
RefSeq Acc Id: | ENSMUSP00000158283 ⟸ ENSMUST00000237923 |
RefSeq Acc Id: | ENSMUSP00000157774 ⟸ ENSMUST00000237723 |
RefSeq Acc Id: | ENSMUSP00000025740 ⟸ ENSMUST00000025740 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9Z0F6-F1-model_v2 | AlphaFold | Q9Z0F6 | 1-389 | view protein structure |
RGD ID: | 6830355 | ||||||||
Promoter ID: | MM_KWN:25996 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, MEF_B6 | ||||||||
Transcripts: | UC008FZI.1 | ||||||||
Position: |
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RGD ID: | 6830357 | ||||||||
Promoter ID: | MM_KWN:25997 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | NM_011237 | ||||||||
Position: |
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RGD ID: | 13678414 | ||||||||
Promoter ID: | EPDNEW_M23356 | ||||||||
Type: | initiation region | ||||||||
Name: | Rad9a_1 | ||||||||
Description: | Mus musculus RAD9 checkpoint clamp component A , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1328356 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000024824 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000025740 | ENTREZGENE |
ENSMUST00000025740.8 | UniProtKB/Swiss-Prot | |
ENSMUST00000237278.2 | UniProtKB/TrEMBL | |
ENSMUST00000237723.2 | UniProtKB/TrEMBL | |
ENSMUST00000237923.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.70.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | DNA_clamp_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Rad9 | UniProtKB/Swiss-Prot | |
Rad9/Ddc1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:19367 | UniProtKB/Swiss-Prot |
MGD | MGI:1328356 | ENTREZGENE |
NCBI Gene | 19367 | ENTREZGENE |
PANTHER | CELL CYCLE CHECKPOINT CONTROL PROTEIN RAD9A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR15237 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Rad9 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Rad9a | PhenoGen |
PIRSF | Cell_cycle_RAD9 | UniProtKB/Swiss-Prot |
Superfamily-SCOP | DNA clamp | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A494B9R8_MOUSE | UniProtKB/TrEMBL |
A0A494BAL0_MOUSE | UniProtKB/TrEMBL | |
A0A494BAY5_MOUSE | UniProtKB/TrEMBL | |
Q8QZZ3 | ENTREZGENE | |
Q9Z0F6 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q8QZZ3 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-02-29 | Rad9a | RAD9 checkpoint clamp component A | RAD9 homolog A | Symbol and/or name change | 5135510 | APPROVED | |
2012-12-25 | Rad9a | RAD9 homolog A | Rad9 | RAD9 homolog (S. pombe) | Symbol and/or name change | 5135510 | APPROVED |