Gcnt1 (glucosaminyl (N-acetyl) transferase 1, core 2) - Rat Genome Database

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Gene: Gcnt1 (glucosaminyl (N-acetyl) transferase 1, core 2) Mus musculus
Analyze
Symbol: Gcnt1
Name: glucosaminyl (N-acetyl) transferase 1, core 2
RGD ID: 1550192
MGI Page MGI
Description: Enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity. Involved in O-glycan processing, core 2 and positive regulation of leukocyte tethering or rolling. Acts upstream of or within kidney morphogenesis and tissue morphogenesis. Predicted to be located in Golgi cisterna; extracellular space; and trans-Golgi network. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; sensory organ; and skeleton. Orthologous to human GCNT1 (glucosaminyl (N-acetyl) transferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5630400D21Rik; B130048E03; beta-1, 6-N-acetylglucosaminyltransferase; beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase; Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (Core 2 branching enzyme) (Core2-GlcNAc-transferase) (C2GNT); C2 GlcNAcT; C2GlcNAcT; C2GNT; C2GnT-L; core 2 beta-1,6-N-acetylglucosaminyltransferase; core 2-branching enzyme; core2-GlcNAc-transferase; IG; IGnT; leukocyte type core 2 beta-1,6-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm15225  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391917,303,505 - 17,350,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1917,303,505 - 17,350,208 (-)EnsemblGRCm39 Ensembl
GRCm381917,326,141 - 17,372,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1917,326,141 - 17,372,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371917,400,631 - 17,431,157 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,956,224 - 17,002,195 (-)NCBIMGSCv36mm8
MGSCv361917,393,162 - 17,439,863 (-)NCBIMGSCv36mm8
Celera1918,000,378 - 18,044,861 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1912.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (EXP)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
copper(II) chloride  (ISO)
corticosterone  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
folic acid  (EXP,ISO)
furan  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
mercury dibromide  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sulindac  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Identification and characterization of a gene regulating enzymatic glycosylation which is induced by diabetes and hyperglycemia specifically in rat cardiac tissue. Nishio Y, etal., J Clin Invest 1995 Oct;96(4):1759-67.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2034277   PMID:7774911   PMID:7890758   PMID:7983056   PMID:8720078   PMID:8910533   PMID:9341170   PMID:9881978   PMID:10349636   PMID:10593880   PMID:11042159   PMID:11076861  
PMID:11389020   PMID:11389021   PMID:11490014   PMID:11739501   PMID:11792630   PMID:12477932   PMID:12676797   PMID:12819125   PMID:12904583   PMID:12954635   PMID:14593101   PMID:14607908  
PMID:14610273   PMID:14681479   PMID:15319280   PMID:15747579   PMID:15778363   PMID:15780986   PMID:15782199   PMID:15880112   PMID:16107727   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:16829524   PMID:17056577   PMID:17101770   PMID:17334369   PMID:17401367   PMID:17967808   PMID:18005667   PMID:18287559   PMID:18554416   PMID:18799693   PMID:18815556   PMID:19057022  
PMID:19349303   PMID:19372458   PMID:20439727   PMID:20841351   PMID:20855471   PMID:20929857   PMID:21224079   PMID:21267068   PMID:21873635   PMID:22056345   PMID:23039181   PMID:23118208  
PMID:23408841   PMID:23555902   PMID:24394666   PMID:27505708   PMID:30379850   PMID:32060138   PMID:32179912   PMID:32203062   PMID:33398185  


Genomics

Comparative Map Data
Gcnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391917,303,505 - 17,350,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1917,303,505 - 17,350,208 (-)EnsemblGRCm39 Ensembl
GRCm381917,326,141 - 17,372,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1917,326,141 - 17,372,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371917,400,631 - 17,431,157 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,956,224 - 17,002,195 (-)NCBIMGSCv36mm8
MGSCv361917,393,162 - 17,439,863 (-)NCBIMGSCv36mm8
Celera1918,000,378 - 18,044,861 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1912.75NCBI
GCNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38976,393,869 - 76,507,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl976,419,850 - 76,651,203 (+)EnsemblGRCh38hg38GRCh38
GRCh37979,008,785 - 79,122,332 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36978,246,402 - 78,312,152 (+)NCBINCBI36Build 36hg18NCBI36
Build 34976,303,699 - 76,351,884NCBI
Celera949,631,307 - 49,697,066 (+)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef948,885,850 - 48,951,687 (+)NCBIHuRef
CHM1_1979,203,394 - 79,269,154 (+)NCBICHM1_1
T2T-CHM13v2.0988,550,440 - 88,663,979 (+)NCBIT2T-CHM13v2.0
Gcnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,145,104 - 224,182,496 (-)NCBIGRCr8
mRatBN7.21214,718,344 - 214,755,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,718,293 - 214,758,776 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1223,052,032 - 223,057,036 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,988,579 - 229,993,584 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,806,576 - 222,811,580 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,547,729 - 236,585,037 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,580,034 - 236,585,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01243,851,152 - 243,888,286 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,824,976 - 220,829,980 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,988,998 - 220,994,003 (-)NCBI
Celera1212,034,132 - 212,039,135 (-)NCBICelera
Cytogenetic Map1q43NCBI
Gcnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555122,827,321 - 2,857,777 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555122,827,321 - 2,857,777 (-)NCBIChiLan1.0ChiLan1.0
GCNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21175,559,426 - 75,673,514 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1975,565,359 - 75,679,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0948,333,104 - 48,400,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1975,301,818 - 75,368,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl975,363,369 - 75,364,655 (+)Ensemblpanpan1.1panPan2
GCNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,985,519 - 82,017,420 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha182,451,255 - 82,483,169 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0182,401,310 - 82,433,256 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl182,401,310 - 82,433,242 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1182,153,115 - 82,221,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,906,815 - 81,938,756 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0182,634,130 - 82,666,060 (-)NCBIUU_Cfam_GSD_1.0
Gcnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947129,174,959 - 129,208,276 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650311,994,841 - 11,997,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650311,994,798 - 11,997,990 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1229,429,066 - 229,468,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11229,429,020 - 229,602,834 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GCNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11287,502,202 - 87,506,171 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1287,503,999 - 87,505,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603875,917,851 - 75,961,305 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248113,930,973 - 3,970,908 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248113,930,673 - 3,973,755 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gcnt1
1951 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2783
Count of miRNA genes:789
Interacting mature miRNAs:1028
Transcripts:ENSMUST00000169897, ENSMUST00000174137, ENSMUST00000174236
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
D87332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381917,328,976 - 17,329,056UniSTSGRCm38
MGSCv371917,403,466 - 17,403,546UniSTSGRCm37
Celera1918,012,183 - 18,012,263UniSTS
Cytogenetic Map19BUniSTS
cM Map1917.0UniSTS
Whitehead/MRC_RH19188.36UniSTS
UniSTS:237902  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381917,326,364 - 17,326,655UniSTSGRCm38
MGSCv371917,400,854 - 17,401,145UniSTSGRCm37
Cytogenetic Map19BUniSTS
cM Map1917.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC147369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY010642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY431975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY768580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ092264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000169897   ⟹   ENSMUSP00000127835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1917,303,507 - 17,316,932 (-)Ensembl
GRCm38.p6 Ensembl1917,326,143 - 17,339,568 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1917,309,610 - 17,334,031 (-)Ensembl
GRCm38.p6 Ensembl1917,332,246 - 17,356,667 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174236   ⟹   ENSMUSP00000133935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1917,303,505 - 17,334,031 (-)Ensembl
GRCm38.p6 Ensembl1917,326,141 - 17,356,667 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235184   ⟹   ENSMUSP00000157544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1917,306,273 - 17,312,800 (-)Ensembl
GRCm38.p6 Ensembl1917,328,909 - 17,335,436 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236139   ⟹   ENSMUSP00000157681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1917,306,033 - 17,350,208 (-)Ensembl
GRCm38.p6 Ensembl1917,328,669 - 17,372,844 (-)Ensembl
RefSeq Acc Id: NM_001136484   ⟹   NP_001129956
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,316,869 (-)NCBI
GRCm381917,326,141 - 17,339,505 (-)NCBI
MGSCv371917,400,631 - 17,431,157 (-)RGD
Celera1918,000,378 - 18,044,861 (-)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010265   ⟹   NP_034395
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,350,208 (-)NCBI
GRCm381917,326,141 - 17,372,844 (-)NCBI
MGSCv371917,400,631 - 17,431,157 (-)RGD
Celera1918,000,378 - 18,044,861 (-)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_173442   ⟹   NP_775618
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,334,031 (-)NCBI
GRCm381917,326,141 - 17,356,667 (-)NCBI
MGSCv371917,400,631 - 17,431,157 (-)RGD
Celera1918,000,378 - 18,044,861 (-)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526679   ⟹   XP_006526742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,334,223 (-)NCBI
GRCm381917,326,141 - 17,356,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247144   ⟹   XP_011245446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,350,103 (-)NCBI
GRCm381917,326,141 - 17,372,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318062   ⟹   XP_017173551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,334,035 (-)NCBI
GRCm381917,326,141 - 17,356,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161433   ⟹   XP_036017326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,317,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161434   ⟹   XP_036017327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391917,303,505 - 17,313,382 (-)NCBI
Sequence:
RefSeq Acc Id: NP_775618   ⟸   NM_173442
- UniProtKB: O35981 (UniProtKB/Swiss-Prot),   Q8BRB2 (UniProtKB/Swiss-Prot),   Q09324 (UniProtKB/Swiss-Prot),   Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_034395   ⟸   NM_010265
- UniProtKB: O35981 (UniProtKB/Swiss-Prot),   Q8BRB2 (UniProtKB/Swiss-Prot),   Q09324 (UniProtKB/Swiss-Prot),   Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129956   ⟸   NM_001136484
- UniProtKB: O35981 (UniProtKB/Swiss-Prot),   Q8BRB2 (UniProtKB/Swiss-Prot),   Q09324 (UniProtKB/Swiss-Prot),   Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526742   ⟸   XM_006526679
- Peptide Label: isoform X1
- UniProtKB: Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245446   ⟸   XM_011247144
- Peptide Label: isoform X1
- UniProtKB: Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173551   ⟸   XM_017318062
- Peptide Label: isoform X1
- UniProtKB: Q5D0D8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000157681   ⟸   ENSMUST00000236139
Ensembl Acc Id: ENSMUSP00000133935   ⟸   ENSMUST00000174236
Ensembl Acc Id: ENSMUSP00000157544   ⟸   ENSMUST00000235184
Ensembl Acc Id: ENSMUSP00000127835   ⟸   ENSMUST00000169897
RefSeq Acc Id: XP_036017326   ⟸   XM_036161433
- Peptide Label: isoform X1
- UniProtKB: Q5D0D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036017327   ⟸   XM_036161434
- Peptide Label: isoform X1
- UniProtKB: Q5D0D8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q09324-F1-model_v2 AlphaFold Q09324 1-428 view protein structure

Promoters
RGD ID:13679060
Promoter ID:EPDNEW_M23679
Type:initiation region
Name:Gcnt1_1
Description:Mus musculus glucosaminyl (N-acetyl) transferase 1, core 2 ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381917,356,617 - 17,356,677EPDNEW
RGD ID:6830050
Promoter ID:MM_KWN:26596
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney
Transcripts:NM_001136484
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361917,413,866 - 17,414,366 (-)MPROMDB
RGD ID:6830052
Promoter ID:MM_KWN:26597
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   Spleen
Transcripts:NM_173442
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361917,430,734 - 17,431,234 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95676 AgrOrtholog
Ensembl Genes ENSMUSG00000038843 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000169897 ENTREZGENE
  ENSMUST00000169897.2 UniProtKB/Swiss-Prot
  ENSMUST00000174236 ENTREZGENE
  ENSMUST00000174236.8 UniProtKB/Swiss-Prot
  ENSMUST00000235184 ENTREZGENE
  ENSMUST00000235184.2 UniProtKB/Swiss-Prot
  ENSMUST00000236139 ENTREZGENE
  ENSMUST00000236139.2 UniProtKB/Swiss-Prot
InterPro Glyco_trans_14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14537 UniProtKB/Swiss-Prot
MGD MGI:95676 ENTREZGENE
NCBI Gene 14537 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Branch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gcnt1 PhenoGen
UniProt GCNT1_MOUSE UniProtKB/Swiss-Prot
  O35981 ENTREZGENE
  Q09324 ENTREZGENE
  Q5D0D8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BRB2 ENTREZGENE
UniProt Secondary O35981 UniProtKB/Swiss-Prot
  Q8BRB2 UniProtKB/Swiss-Prot