Catsperz (cation channel sperm associated auxiliary subunit zeta) - Rat Genome Database

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Gene: Catsperz (cation channel sperm associated auxiliary subunit zeta) Mus musculus
Analyze
Symbol: Catsperz
Name: cation channel sperm associated auxiliary subunit zeta
RGD ID: 1618373
MGI Page MGI
Description: Involved in flagellated sperm motility; male meiotic nuclear division; and sperm capacitation. Localizes to CatSper complex and sperm principal piece. Orthologous to human CATSPERZ (catsper channel auxiliary subunit zeta); INTERACTS WITH aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog); butanal (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1700019N12Rik; A430107B04Rik; cation channel sperm-associated protein subunit zeta; catSper-zeta; catSperzeta; hypothetical protein LOC67077; MLZ-622; protein expressed in male leptotene and zygotene spermatocytes 622; testis expressed 40; testis-expressed protein 40; testis-expressed sequence 40 protein; Tex40; uncharacterized protein C11orf20 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,899,794 - 6,902,748 (-)NCBIGRCm39mm39
GRCm39 Ensembl196,899,739 - 6,902,748 (-)Ensembl
GRCm38196,922,426 - 6,925,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,922,371 - 6,925,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,996,916 - 6,999,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv36196,989,293 - 6,992,425 (-)NCBImm8
Celera196,699,361 - 6,702,315 (-)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15618518   PMID:16141072   PMID:16141073   PMID:20339383   PMID:21267068  
PMID:21873635   PMID:28226241   PMID:31056283  


Genomics

Comparative Map Data
Catsperz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,899,794 - 6,902,748 (-)NCBIGRCm39mm39
GRCm39 Ensembl196,899,739 - 6,902,748 (-)Ensembl
GRCm38196,922,426 - 6,925,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,922,371 - 6,925,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,996,916 - 6,999,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv36196,989,293 - 6,992,425 (-)NCBImm8
Celera196,699,361 - 6,702,315 (-)NCBICelera
Cytogenetic Map19ANCBI
CATSPERZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1164,300,358 - 64,304,770 (+)EnsemblGRCh38hg38GRCh38
GRCh381164,300,358 - 64,304,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371164,067,830 - 64,072,242 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,824,439 - 63,828,815 (+)NCBINCBI36hg18NCBI36
Celera1161,394,765 - 61,395,361 (+)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1160,395,592 - 60,399,968 (+)NCBIHuRef
CHM1_11163,950,864 - 63,955,229 (+)NCBICHM1_1
Catsperz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21204,114,816 - 204,118,582 (-)NCBI
Rnor_6.0 Ensembl1222,179,436 - 222,182,721 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01222,179,451 - 222,182,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01229,170,306 - 229,173,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,598,404 - 209,601,543 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1201,648,769 - 201,651,972 (-)NCBICelera
Cytogenetic Map1q43NCBI
Catsperz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,777,488 - 20,780,765 (-)NCBIChiLan1.0ChiLan1.0
CATSPERZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11162,994,459 - 63,006,546 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,001,836 - 63,006,546 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01159,657,237 - 59,661,838 (+)NCBIMhudiblu_PPA_v0panPan3
CATSPERZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,763,714 - 52,766,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,370,788 - 51,373,937 (-)NCBI
ROS_Cfam_1.01853,809,128 - 53,812,271 (-)NCBI
UMICH_Zoey_3.11852,901,196 - 52,904,525 (-)NCBI
UNSW_CanFamBas_1.01852,487,567 - 52,490,710 (-)NCBI
UU_Cfam_GSD_1.01853,271,446 - 53,274,595 (-)NCBI
Catsperz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,464,909 - 8,468,151 (-)NCBI
SpeTri2.0NW_0049365994,907,039 - 4,910,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPERZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.127,813,296 - 7,817,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,880,227 - 6,883,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CATSPERZ
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,930,186 - 9,934,024 (-)NCBI
ChlSab1.1 Ensembl19,930,312 - 9,933,909 (-)Ensembl
Catsperz
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476722,008,258 - 22,011,643 (-)NCBI

Position Markers
Kcnk4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38196,925,719 - 6,925,926UniSTSGRCm38
MGSCv37197,000,209 - 7,000,416UniSTSGRCm37
Celera196,702,654 - 6,702,861UniSTS
Cytogenetic Map19AUniSTS
cM Map194.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950147898980461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:113
Interacting mature miRNAs:116
Transcripts:ENSMUST00000057716
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000057716   ⟹   ENSMUSP00000056681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,423 - 6,925,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235924
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,352 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236318
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,430 - 6,925,337 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237380   ⟹   ENSMUSP00000158477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,423 - 6,925,359 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,424 - 6,925,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237586   ⟹   ENSMUSP00000158037
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,371 - 6,924,869 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,352 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237743   ⟹   ENSMUSP00000158423
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,430 - 6,924,889 (-)Ensembl
RefSeq Acc Id: NM_001039494   ⟹   NP_001034583
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39196,899,794 - 6,902,748 (-)NCBI
GRCm38196,922,426 - 6,925,380 (-)NCBI
MGSCv37196,996,916 - 6,999,870 (-)RGD
Celera196,699,361 - 6,702,315 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001034583   ⟸   NM_001039494
- UniProtKB: Q9CQP8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158477   ⟸   ENSMUST00000237380
RefSeq Acc Id: ENSMUSP00000158423   ⟸   ENSMUST00000237743
RefSeq Acc Id: ENSMUSP00000158037   ⟸   ENSMUST00000237586
RefSeq Acc Id: ENSMUSP00000056681   ⟸   ENSMUST00000057716

Promoters
RGD ID:13678700
Promoter ID:EPDNEW_M23499
Type:initiation region
Name:Catsperz_1
Description:Mus musculus cation channel sperm associated auxiliary subunitzeta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38196,925,356 - 6,925,416EPDNEW
RGD ID:6829653
Promoter ID:MM_KWN:26221
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung,   Spleen
Transcripts:NM_001039494
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36196,999,426 - 7,000,092 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914327 AgrOrtholog
Ensembl Genes ENSMUSG00000050623 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000056681 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000158037 UniProtKB/TrEMBL
  ENSMUSP00000158423 UniProtKB/TrEMBL
  ENSMUSP00000158477 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000237380 UniProtKB/TrEMBL
  ENSMUST00000237586 UniProtKB/TrEMBL
  ENSMUST00000237743 UniProtKB/TrEMBL
InterPro CATSPERZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67077 UniProtKB/Swiss-Prot
MGD MGI:1914327 ENTREZGENE
NCBI Gene 67077 ENTREZGENE
PANTHER PTHR42155 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Catsperz PhenoGen
UniProt A0A494BAH2_MOUSE UniProtKB/TrEMBL
  A0A494BBE0_MOUSE UniProtKB/TrEMBL
  A0A494BBE5_MOUSE UniProtKB/TrEMBL
  CTSRZ_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9DAA2 UniProtKB/Swiss-Prot
  Q9DAP8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Catsperz  cation channel sperm associated auxiliary subunit zeta  Tex40  testis expressed 40  Symbol and/or name change 5135510 APPROVED
2013-02-12 Tex40  testis expressed 40  1700019N12Rik  RIKEN cDNA 1700019N12 gene  Symbol and/or name change 5135510 APPROVED