Catsperz (cation channel sperm associated auxiliary subunit zeta) - Rat Genome Database

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Gene: Catsperz (cation channel sperm associated auxiliary subunit zeta) Mus musculus
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Symbol: Catsperz
Name: cation channel sperm associated auxiliary subunit zeta
RGD ID: 1618373
MGI Page MGI
Description: Involved in flagellated sperm motility; male meiotic nuclear division; and sperm capacitation. Localizes to CatSper complex and sperm principal piece. Orthologous to human CATSPERZ (catsper channel auxiliary subunit zeta); INTERACTS WITH aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog); butanal (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1700019N12Rik; A430107B04Rik; cation channel sperm-associated protein subunit zeta; catSper-zeta; catSperzeta; hypothetical protein LOC67077; MLZ-622; protein expressed in male leptotene and zygotene spermatocytes 622; testis expressed 40; testis-expressed protein 40; testis-expressed sequence 40 protein; Tex40; uncharacterized protein C11orf20 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,899,794 - 6,902,748 (-)NCBIGRCm39mm39
GRCm39 Ensembl196,899,739 - 6,902,748 (-)Ensembl
GRCm38196,922,426 - 6,925,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,922,371 - 6,925,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,996,916 - 6,999,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv36196,989,293 - 6,992,425 (-)NCBImm8
Celera196,699,361 - 6,702,315 (-)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15618518   PMID:16141072   PMID:16141073   PMID:20339383   PMID:21267068  
PMID:21873635   PMID:28226241   PMID:31056283  


Genomics

Comparative Map Data
Catsperz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,899,794 - 6,902,748 (-)NCBIGRCm39mm39
GRCm39 Ensembl196,899,739 - 6,902,748 (-)Ensembl
GRCm38196,922,426 - 6,925,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,922,371 - 6,925,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,996,916 - 6,999,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv36196,989,293 - 6,992,425 (-)NCBImm8
Celera196,699,361 - 6,702,315 (-)NCBICelera
Cytogenetic Map19ANCBI
CATSPERZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1164,300,358 - 64,304,770 (+)EnsemblGRCh38hg38GRCh38
GRCh381164,300,358 - 64,304,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371164,067,830 - 64,072,242 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,824,439 - 63,828,815 (+)NCBINCBI36hg18NCBI36
Celera1161,394,765 - 61,395,361 (+)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1160,395,592 - 60,399,968 (+)NCBIHuRef
CHM1_11163,950,864 - 63,955,229 (+)NCBICHM1_1
Catsperz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21204,114,816 - 204,118,582 (-)NCBI
Rnor_6.0 Ensembl1222,179,436 - 222,182,721 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01222,179,451 - 222,182,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01229,170,306 - 229,173,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,598,404 - 209,601,543 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1201,648,769 - 201,651,972 (-)NCBICelera
Cytogenetic Map1q43NCBI
Catsperz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,777,488 - 20,780,765 (-)NCBIChiLan1.0ChiLan1.0
CATSPERZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11162,994,459 - 63,006,546 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,001,836 - 63,006,546 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01159,657,237 - 59,661,838 (+)NCBIMhudiblu_PPA_v0panPan3
CATSPERZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,763,714 - 52,766,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,370,788 - 51,373,937 (-)NCBI
ROS_Cfam_1.01853,809,128 - 53,812,271 (-)NCBI
UMICH_Zoey_3.11852,901,196 - 52,904,525 (-)NCBI
UNSW_CanFamBas_1.01852,487,567 - 52,490,710 (-)NCBI
UU_Cfam_GSD_1.01853,271,446 - 53,274,595 (-)NCBI
Catsperz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,464,909 - 8,468,151 (-)NCBI
SpeTri2.0NW_0049365994,907,039 - 4,910,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPERZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.127,813,296 - 7,817,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,880,227 - 6,883,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CATSPERZ
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,930,186 - 9,934,024 (-)NCBI
ChlSab1.1 Ensembl19,930,312 - 9,933,909 (-)Ensembl
Catsperz
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476722,008,258 - 22,011,643 (-)NCBI

Position Markers
Kcnk4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38196,925,719 - 6,925,926UniSTSGRCm38
MGSCv37197,000,209 - 7,000,416UniSTSGRCm37
Celera196,702,654 - 6,702,861UniSTS
Cytogenetic Map19AUniSTS
cM Map194.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950147898980461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:113
Interacting mature miRNAs:116
Transcripts:ENSMUST00000057716
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000057716   ⟹   ENSMUSP00000056681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,423 - 6,925,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235924
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,352 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236318
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,430 - 6,925,337 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237380   ⟹   ENSMUSP00000158477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,423 - 6,925,359 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,424 - 6,925,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237586   ⟹   ENSMUSP00000158037
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,371 - 6,924,869 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,480 - 6,925,352 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237743   ⟹   ENSMUSP00000158423
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl196,922,430 - 6,924,889 (-)Ensembl
RefSeq Acc Id: NM_001039494   ⟹   NP_001034583
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39196,899,794 - 6,902,748 (-)NCBI
GRCm38196,922,426 - 6,925,380 (-)NCBI
MGSCv37196,996,916 - 6,999,870 (-)RGD
Celera196,699,361 - 6,702,315 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001034583   ⟸   NM_001039494
- UniProtKB: Q9CQP8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158477   ⟸   ENSMUST00000237380
RefSeq Acc Id: ENSMUSP00000158423   ⟸   ENSMUST00000237743
RefSeq Acc Id: ENSMUSP00000158037   ⟸   ENSMUST00000237586
RefSeq Acc Id: ENSMUSP00000056681   ⟸   ENSMUST00000057716

Promoters
RGD ID:13678700
Promoter ID:EPDNEW_M23499
Type:initiation region
Name:Catsperz_1
Description:Mus musculus cation channel sperm associated auxiliary subunitzeta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38196,925,356 - 6,925,416EPDNEW
RGD ID:6829653
Promoter ID:MM_KWN:26221
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung,   Spleen
Transcripts:NM_001039494
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36196,999,426 - 7,000,092 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914327 AgrOrtholog
Ensembl Genes ENSMUSG00000050623 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000056681 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000158037 UniProtKB/TrEMBL
  ENSMUSP00000158423 UniProtKB/TrEMBL
  ENSMUSP00000158477 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000237380 UniProtKB/TrEMBL
  ENSMUST00000237586 UniProtKB/TrEMBL
  ENSMUST00000237743 UniProtKB/TrEMBL
InterPro CATSPERZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67077 UniProtKB/Swiss-Prot
MGD MGI:1914327 ENTREZGENE
NCBI Gene 67077 ENTREZGENE
PANTHER PTHR42155 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Catsperz PhenoGen
UniProt A0A494BAH2_MOUSE UniProtKB/TrEMBL
  A0A494BBE0_MOUSE UniProtKB/TrEMBL
  A0A494BBE5_MOUSE UniProtKB/TrEMBL
  CTSRZ_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9DAA2 UniProtKB/Swiss-Prot
  Q9DAP8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Catsperz  cation channel sperm associated auxiliary subunit zeta  Tex40  testis expressed 40  Symbol and/or name change 5135510 APPROVED
2013-02-12 Tex40  testis expressed 40  1700019N12Rik  RIKEN cDNA 1700019N12 gene  Symbol and/or name change 5135510 APPROVED