Gm25432 (predicted gene, 25432) - Rat Genome Database

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Gene: Gm25432 (predicted gene, 25432) Mus musculus
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Symbol: Gm25432
Name: predicted gene, 25432
RGD ID: 9647938
MGI Page MGI
Description: INTERACTS WITH versicolorin A (ortholog)
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: Gm5243; predicted gene 5243
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,485,957 - 5,486,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,486,026 - 5,486,753 (+)EnsemblGRCm39 Ensembl
GRCm38195,435,929 - 5,436,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,435,998 - 5,436,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,435,926 - 5,436,847 (+)MERGEGRCm37MGSCv37mm9NCBIm37
Celera195,308,160 - 5,309,031 (+)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm25432
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,485,957 - 5,486,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,486,026 - 5,486,753 (+)EnsemblGRCm39 Ensembl
GRCm38195,435,929 - 5,436,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,435,998 - 5,436,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,435,926 - 5,436,847 (+)MERGEGRCm37MGSCv37mm9NCBIm37
Celera195,308,160 - 5,309,031 (+)NCBICelera
Cytogenetic Map19ANCBI
SNORD86
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,656,097 - 2,656,182 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,656,097 - 2,656,182 (+)EnsemblGRCh38hg38GRCh38
GRCh37202,636,743 - 2,636,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera202,701,206 - 2,701,291 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,585,971 - 2,586,056 (+)NCBIHuRef
CHM1_1202,637,150 - 2,637,235 (+)NCBICHM1_1
T2T-CHM13v2.0202,686,564 - 2,686,649 (+)NCBIT2T-CHM13v2.0
Snord86
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,932,824 - 137,932,909 (+)NCBIGRCr8
mRatBN7.23117,479,698 - 117,479,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,479,698 - 117,479,783 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3122,806,417 - 122,806,502 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q36NCBI
LOC119865811
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2418,392,902 - 18,392,987 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,021,376 - 19,021,461 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,021,376 - 19,021,461 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,577,611 - 18,577,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,687,863 - 18,687,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,016,962 - 19,017,047 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25432
9 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_388313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000237006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,486,026 - 5,486,753 (+)Ensembl
GRCm38.p6 Ensembl195,435,998 - 5,436,725 (+)Ensembl
RefSeq Acc Id: XR_388313
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,435,929 - 5,436,800 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000117771 Ensembl, ENTREZGENE
MGD MGI:5455209 ENTREZGENE
NCBI Gene Gm25432 ENTREZGENE
PhenoGen Gm25432 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-15 Gm25432  predicted gene, 25432  Gm5243  predicted gene 5243  Data merged from RGD:2307799 737654 PROVISIONAL