Or5b97 (olfactory receptor family 5 subfamily B member 97) - Rat Genome Database

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Gene: Or5b97 (olfactory receptor family 5 subfamily B member 97) Mus musculus
Analyze
No known orthologs.
Symbol: Or5b97
Name: olfactory receptor family 5 subfamily B member 97
RGD ID: 1614093
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to act upstream of or within detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Orthologous to human OR5B3 (olfactory receptor family 5 subfamily B member 3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2RE5P-3231251-3230331; MOR202; MOR202-3; olfactory receptor 1447; olfactory receptor MOR202-3; Olfr1447
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,878,213 - 12,879,142 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,876,798 - 12,881,107 (-)EnsemblGRCm39 Ensembl
GRCm381912,900,849 - 12,901,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,899,434 - 12,903,743 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,975,339 - 12,976,268 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,967,868 - 12,968,797 (-)NCBIMGSCv36mm8
Celera1913,568,913 - 13,569,842 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or5b97
54 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSMUST00000071484
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse

Markers in Region
UniSTS:485146  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381912,900,849 - 12,901,778UniSTSGRCm38
MGSCv371912,975,339 - 12,976,268UniSTSGRCm37
Celera1913,568,913 - 13,569,842UniSTS
Cytogenetic Map19C1UniSTS
UniSTS:495628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381912,900,749 - 12,901,861UniSTSGRCm38
MGSCv371912,975,239 - 12,976,351UniSTSGRCm37
Celera1913,568,813 - 13,569,925UniSTS
Cytogenetic Map19C1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000071484   ⟹   ENSMUSP00000071419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,878,113 - 12,879,225 (-)Ensembl
GRCm38.p6 Ensembl1912,900,749 - 12,901,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208343   ⟹   ENSMUSP00000147020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,878,814 - 12,881,094 (-)Ensembl
GRCm38.p6 Ensembl1912,901,450 - 12,903,730 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216989   ⟹   ENSMUSP00000149392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,876,798 - 12,881,107 (-)Ensembl
GRCm38.p6 Ensembl1912,899,434 - 12,903,743 (-)Ensembl
RefSeq Acc Id: NM_146703   ⟹   NP_666914
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391912,878,213 - 12,879,142 (-)NCBI
GRCm381912,900,849 - 12,901,778 (-)NCBI
MGSCv371912,975,339 - 12,976,268 (-)RGD
Celera1913,568,913 - 13,569,842 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666914 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI25360 (Get FASTA)   NCBI Sequence Viewer  
  AAI32256 (Get FASTA)   NCBI Sequence Viewer  
  AAL61055 (Get FASTA)   NCBI Sequence Viewer  
  AAP71817 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000071419
  ENSMUSP00000071419.3
  ENSMUSP00000147020.2
  ENSMUSP00000149392.2
Reference Protein Sequences
RefSeq Acc Id: NP_666914   ⟸   NM_146703
- UniProtKB: Q8VFX3 (UniProtKB/TrEMBL),   Q7TQR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071419   ⟸   ENSMUST00000071484
RefSeq Acc Id: ENSMUSP00000149392   ⟸   ENSMUST00000216989
RefSeq Acc Id: ENSMUSP00000147020   ⟸   ENSMUST00000208343
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VFX3-F1-model_v2 AlphaFold Q8VFX3 1-309 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031281 AgrOrtholog
Ensembl Genes ENSMUSG00000060303 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071484 ENTREZGENE
  ENSMUST00000071484.4 UniProtKB/TrEMBL
  ENSMUST00000208343.2 UniProtKB/TrEMBL
  ENSMUST00000216989.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258698 UniProtKB/TrEMBL
MGD MGI:3031281 ENTREZGENE
NCBI Gene 258698 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5b97 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A140LIZ6_MOUSE UniProtKB/TrEMBL
  Q7TQR5 ENTREZGENE, UniProtKB/TrEMBL
  Q8VFX3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5b97  olfactory receptor family 5 subfamily B member 97  Olfr1447  olfactory receptor 1447  Symbol and/or name change 5135510 APPROVED