Gm50340 (predicted gene, 50340) - Rat Genome Database

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Gene: Gm50340 (predicted gene, 50340) Mus musculus
Analyze
Symbol: Gm50340
Name: predicted gene, 50340
RGD ID: 14999469
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,877,042 - 9,880,025 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl199,876,988 - 9,880,035 (+)EnsemblGRCm39 Ensembl
GRCm38199,899,678 - 9,902,661 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,899,690 - 9,902,661 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in Gm50340
58 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000235252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl199,876,988 - 9,880,025 (+)Ensembl
GRCm38.p6 Ensembl199,899,935 - 9,901,111 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl199,877,038 - 9,880,025 (+)Ensembl
GRCm38.p6 Ensembl199,899,694 - 9,902,661 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl199,877,028 - 9,880,035 (+)Ensembl
GRCm38.p6 Ensembl199,899,690 - 9,902,557 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl199,877,042 - 9,880,029 (+)Ensembl
RefSeq Acc Id: NR_168100
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39199,877,042 - 9,880,025 (+)NCBI
GRCm38199,899,678 - 9,902,661 (+)NCBI
Sequence:
RefSeq Acc Id: NR_168101
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39199,877,042 - 9,880,025 (+)NCBI
GRCm38199,899,678 - 9,902,661 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118100 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000235986 ENTREZGENE
  ENSMUST00000241757 ENTREZGENE
MGD MGI:6303216 ENTREZGENE
NCBI Gene Gm50340 ENTREZGENE
PhenoGen Gm50340 PhenoGen
RNAcentral URS0001BBE3D8 RNACentral
  URS0001BBE4EC RNACentral