Frmd8os (FERM domain containing 8, opposite strand) - Rat Genome Database

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Gene: Frmd8os (FERM domain containing 8, opposite strand) Mus musculus
Analyze
Symbol: Frmd8os
Name: FERM domain containing 8, opposite strand
RGD ID: 11082495
MGI Page MGI
Description:
Type: gene (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: 2310035N23Rik; ENSMUSG00000043488; Gm9783
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,895,978 - 5,901,400 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,895,651 - 5,901,416 (+)EnsemblGRCm39 Ensembl
GRCm38195,845,657 - 5,851,372 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,845,623 - 5,851,388 (+)EnsemblGRCm38mm10GRCm38
Celera195,716,642 - 5,721,600 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24316575  


Genomics

Variants

.
Variants in Frmd8os
142 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:152
Interacting mature miRNAs:161
Transcripts:ENSMUST00000135347
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000135347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,898,529 - 5,901,406 (+)Ensembl
GRCm38.p6 Ensembl195,848,508 - 5,851,372 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,895,651 - 5,901,416 (+)Ensembl
GRCm38.p6 Ensembl195,845,623 - 5,851,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,898,529 - 5,900,963 (+)Ensembl
RefSeq Acc Id: XR_004940242
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,895,978 - 5,901,400 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein ADB54824 (Get FASTA)   NCBI Sequence Viewer  
  BAC25263 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15095022
Promoter ID:EPDNEWNC_M2942
Type:single initiation site
Name:Frmd8os_1
Description:FERM domain containing 8, opposite strand [Source:MGISymbol;Acc:MGI:3704490]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,848,506 - 5,848,566EPDNEWNC
RGD ID:13678590
Promoter ID:EPDNEW_M23444
Type:single initiation site
Name:AK009639_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,848,506 - 5,848,566EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000043488 Ensembl
MGD MGI:3704490 ENTREZGENE
NCBI Gene Frmd8os ENTREZGENE
PhenoGen Frmd8os PhenoGen
UniProt D2XZ15_MOUSE UniProtKB/TrEMBL
  Q8CEY4_MOUSE UniProtKB/TrEMBL