BE692007 (expressed sequence BE692007) - Rat Genome Database

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Advanced Search (OLGA)
Gene: BE692007 (expressed sequence BE692007) Mus musculus
Analyze
Symbol: BE692007
Name: expressed sequence BE692007
RGD ID: 11084644
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,450,811 - 11,457,669 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,447,437 - 11,468,986 (-)EnsemblGRCm39 Ensembl
GRCm381911,473,447 - 11,482,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,470,166 - 11,484,578 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,544,531 - 11,559,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1912,142,708 - 12,157,256 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in BE692007
152 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000186054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,462 - 11,462,025 (-)Ensembl
GRCm38.p6 Ensembl1911,470,166 - 11,484,577 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,457,569 - 11,468,986 (-)Ensembl
GRCm38.p6 Ensembl1911,480,205 - 11,484,535 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,462 - 11,461,994 (-)Ensembl
GRCm38.p6 Ensembl1911,480,087 - 11,484,578 (-)Ensembl
Ensembl Acc Id: ENSMUST00000240810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,462 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,949 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,406 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,437 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,440 - 11,462,018 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,447,539 - 11,462,018 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,462,056 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,461,994 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,461,993 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,461,948 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,072 - 11,461,903 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,118 - 11,461,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,198 - 11,461,986 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,448,212 - 11,461,964 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,451,751 - 11,461,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,462,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,994 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,986 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,980 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,980 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,956 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,453,408 - 11,461,939 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,454,149 - 11,461,984 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,454,149 - 11,461,982 (-)Ensembl
Ensembl Acc Id: ENSMUST00000308900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1911,459,663 - 11,462,054 (-)Ensembl
RefSeq Acc Id: XR_003952860
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391911,450,811 - 11,457,669 (-)NCBI
GRCm381911,473,447 - 11,482,579 (-)NCBI
Sequence:
RefSeq Acc Id: XR_386557
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391911,450,811 - 11,457,669 (-)NCBI
GRCm381911,473,447 - 11,481,101 (-)NCBI
Sequence:
Promoters
RGD ID:15095037
Promoter ID:EPDNEWNC_M2957
Type:initiation region
Name:BE692007_1
Description:expressed sequence BE692007 [Source:MGISymbol;Acc:MGI:3035348]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381911,484,622 - 11,484,682EPDNEWNC
RGD ID:13678974
Promoter ID:EPDNEW_M23637
Type:initiation region
Name:AK079938_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381911,484,654 - 11,484,714EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099757 Ensembl
MGD MGI:3035348 ENTREZGENE
NCBI Gene BE692007 ENTREZGENE
PhenoGen BE692007 PhenoGen
RNAcentral URS00025E4DBE RNACentral
  URS00025E4F3B RNACentral
  URS00025E576C RNACentral
  URS00025E5BC0 RNACentral
  URS00025E7F80 RNACentral
  URS00025EAA27 RNACentral
  URS00025F2F94 RNACentral
  URS00025F7B71 RNACentral