Chka (choline kinase alpha) - Rat Genome Database

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Gene: Chka (choline kinase alpha) Mus musculus
Analyze
Symbol: Chka
Name: choline kinase alpha
RGD ID: 62237
MGI Page MGI
Description: Enables choline kinase activity; cholinesterase activity; and identical protein binding activity. Acts upstream of or within phosphatidylcholine biosynthetic process. Predicted to be located in lipid droplet. Predicted to be active in cytosol. Is expressed in several structures, including future brain; gut; liver; metanephros; and neural retina. Orthologous to human CHKA (choline kinase alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Chetk-alpha; Chk; Cho; ChoK; choline/ethanolamine kinase alpha; choline/ethanolamine kinase-alpha; CK; CK/EK-a; CK/EK-alpha; EK; ethanolamine kinase; EtnK-; EtnK-alpha
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,901,585 - 3,944,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,901,773 - 3,944,369 (+)EnsemblGRCm39 Ensembl
GRCm38193,851,585 - 3,894,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,851,773 - 3,894,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,851,773 - 3,894,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,851,773 - 3,894,369 (+)NCBIMGSCv36mm8
Celera193,732,122 - 3,774,742 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetaldehyde  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
cyproconazole  (EXP)
deguelin  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
diclofenac  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenpyroximate  (ISO)
fenthion  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
furan  (EXP)
gentamycin  (ISO)
graphene oxide  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (EXP)
menadione  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methotrexate  (EXP,ISO)
methyl carbamate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
parathion  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
quercetin  (EXP,ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (EXP)
Soman  (ISO)
streptozocin  (EXP)
succimer  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
tetraphene  (EXP)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topiramate  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
cytosol  (ISO)
lipid droplet  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Increased choline kinase activity and elevated phosphocholine levels in human colon cancer. Nakagami K, etal., Jpn J Cancer Res. 1999 Apr;90(4):419-24.
6. Increased choline kinase activity in 1,2-dimethylhydrazine-induced rat colon cancer. Nakagami K, etal., Jpn J Cancer Res. 1999 Nov;90(11):1212-7.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive regional and temporal gene expression profiling of the rat brain during the first 24 h after experimental stroke identifies dynamic ischemia-induced gene expression patterns, and reveals a biphasic activation of genes in surviving tissue. Rickhag M, etal., J Neurochem. 2006 Jan;96(1):14-29. Epub 2005 Nov 21.
Additional References at PubMed
PMID:8889548   PMID:9714798   PMID:10349636   PMID:10706593   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11812828   PMID:11964179   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:14681479   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16371353   PMID:16490392   PMID:16820874   PMID:17728180   PMID:18029352  
PMID:20026284   PMID:20525991   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26125130   PMID:30973865   PMID:32325033   PMID:33473114   PMID:34702858  


Genomics

Comparative Map Data
Chka
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,901,585 - 3,944,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,901,773 - 3,944,369 (+)EnsemblGRCm39 Ensembl
GRCm38193,851,585 - 3,894,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,851,773 - 3,894,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,851,773 - 3,894,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,851,773 - 3,894,369 (+)NCBIMGSCv36mm8
Celera193,732,122 - 3,774,742 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.57NCBI
CHKA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,052,859 - 68,121,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,052,859 - 68,121,444 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,820,326 - 67,888,855 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,576,902 - 67,645,434 (-)NCBINCBI36Build 36hg18NCBI36
Celera1165,154,000 - 65,222,386 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,155,675 - 64,231,363 (-)NCBIHuRef
CHM1_11167,704,080 - 67,773,223 (-)NCBICHM1_1
T2T-CHM13v2.01168,056,500 - 68,125,033 (-)NCBIT2T-CHM13v2.0
Chka
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,506,069 - 210,554,753 (+)NCBIGRCr8
mRatBN7.21201,076,804 - 201,125,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,076,860 - 201,125,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,450,243 - 209,498,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,538,854 - 216,587,504 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,213,056 - 209,261,706 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,076,618 - 219,126,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,077,771 - 219,126,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,950,340 - 225,998,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,368,963 - 206,418,526 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,522,415 - 206,571,978 (+)NCBI
Celera1198,630,045 - 198,678,068 (+)NCBICelera
Cytogenetic Map1q43NCBI
Chka
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,710,434 - 17,766,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,710,981 - 17,766,256 (+)NCBIChiLan1.0ChiLan1.0
CHKA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,003,455 - 69,071,569 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,046,717 - 70,114,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,134,776 - 63,202,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,443,275 - 66,486,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,444,406 - 66,510,221 (-)Ensemblpanpan1.1panPan2
CHKA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,717,512 - 49,784,653 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,745,437 - 49,781,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,326,328 - 48,395,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,633,890 - 50,707,854 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,633,254 - 50,704,171 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11849,851,764 - 49,917,733 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,426,624 - 49,492,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,219,763 - 50,289,786 (+)NCBIUU_Cfam_GSD_1.0
Chka
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,589,711 - 5,626,074 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,001,673 - 2,067,399 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,031,953 - 2,068,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHKA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,788,213 - 4,846,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,788,508 - 4,846,667 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,416,315 - 3,474,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHKA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,411,606 - 6,482,508 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038103,689,653 - 103,760,737 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chka
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,744,547 - 18,807,352 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,744,647 - 18,807,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chka
1128 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2557
Count of miRNA genes:765
Interacting mature miRNAs:992
Transcripts:ENSMUST00000025760, ENSMUST00000072055, ENSMUST00000124219, ENSMUST00000125013, ENSMUST00000125411, ENSMUST00000125640, ENSMUST00000125859, ENSMUST00000127544, ENSMUST00000128694, ENSMUST00000139655, ENSMUST00000146463, ENSMUST00000148325, ENSMUST00000153343, ENSMUST00000154467
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse

Markers in Region
RH125233  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,894,158 - 3,894,274UniSTSGRCm38
MGSCv37193,894,158 - 3,894,274UniSTSGRCm37
Celera193,774,533 - 3,774,649UniSTS
Cytogenetic Map19AUniSTS
cM Map193.0UniSTS
UniSTS:225274  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,894,161 - 3,894,317UniSTSGRCm38
MGSCv37193,894,161 - 3,894,317UniSTSGRCm37
Celera193,774,536 - 3,774,692UniSTS
Cytogenetic Map19AUniSTS
cM Map193.0UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Chk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38193,894,163 - 3,894,336UniSTSGRCm38
MGSCv37193,894,163 - 3,894,336UniSTSGRCm37
Celera193,774,538 - 3,774,711UniSTS
Cytogenetic Map19AUniSTS
cM Map193.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB011002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB030621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE863716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU918359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY705262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025760   ⟹   ENSMUSP00000025760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,902,076 - 3,944,364 (+)Ensembl
GRCm38.p6 Ensembl193,852,076 - 3,894,364 (+)Ensembl
RefSeq Acc Id: ENSMUST00000072055   ⟹   ENSMUSP00000071933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,797 - 3,944,369 (+)Ensembl
GRCm38.p6 Ensembl193,851,797 - 3,894,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,832 - 3,928,614 (+)Ensembl
GRCm38.p6 Ensembl193,851,832 - 3,878,614 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,941,731 - 3,943,657 (+)Ensembl
GRCm38.p6 Ensembl193,891,731 - 3,893,657 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,810 - 3,921,913 (+)Ensembl
GRCm38.p6 Ensembl193,851,810 - 3,871,913 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125640   ⟹   ENSMUSP00000119493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,902,363 - 3,937,450 (+)Ensembl
GRCm38.p6 Ensembl193,852,363 - 3,887,450 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,810 - 3,944,367 (+)Ensembl
GRCm38.p6 Ensembl193,851,810 - 3,894,367 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,925,405 - 3,936,416 (+)Ensembl
GRCm38.p6 Ensembl193,875,405 - 3,886,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128694   ⟹   ENSMUSP00000119919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,773 - 3,944,365 (+)Ensembl
GRCm38.p6 Ensembl193,851,773 - 3,894,365 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139655   ⟹   ENSMUSP00000116427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,902,101 - 3,935,864 (+)Ensembl
GRCm38.p6 Ensembl193,852,101 - 3,885,864 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,925,379 - 3,934,538 (+)Ensembl
GRCm38.p6 Ensembl193,875,379 - 3,884,538 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,925,365 - 3,934,585 (+)Ensembl
GRCm38.p6 Ensembl193,875,365 - 3,884,585 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153343   ⟹   ENSMUSP00000115861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,924,664 - 3,939,934 (+)Ensembl
GRCm38.p6 Ensembl193,874,664 - 3,889,934 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl193,901,832 - 3,917,670 (+)Ensembl
GRCm38.p6 Ensembl193,851,832 - 3,867,670 (+)Ensembl
RefSeq Acc Id: NM_001271496   ⟹   NP_001258425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,367 (+)NCBI
GRCm38193,851,773 - 3,894,369 (+)NCBI
Celera193,732,122 - 3,774,744 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001410133   ⟹   NP_001397062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,367 (+)NCBI
RefSeq Acc Id: NM_013490   ⟹   NP_038518
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,367 (+)NCBI
GRCm38193,851,773 - 3,894,369 (+)NCBI
MGSCv37193,851,773 - 3,894,367 (+)RGD
Celera193,732,122 - 3,774,744 (+)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_073190
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,367 (+)NCBI
GRCm38193,851,773 - 3,894,369 (+)NCBI
Celera193,732,122 - 3,774,744 (+)NCBI
Sequence:
RefSeq Acc Id: NR_176954
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,367 (+)NCBI
RefSeq Acc Id: XM_006531648   ⟹   XP_006531711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,832 - 3,944,368 (+)NCBI
GRCm38193,851,832 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248599   ⟹   XP_011246901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318048   ⟹   XP_017173537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,915,125 - 3,944,368 (+)NCBI
GRCm38193,864,801 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318049   ⟹   XP_017173538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,915,125 - 3,944,368 (+)NCBI
GRCm38193,864,801 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250724   ⟹   XP_030106584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250725   ⟹   XP_030106585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250726   ⟹   XP_030106586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250727   ⟹   XP_030106587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250728   ⟹   XP_030106588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250729   ⟹   XP_030106589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,836 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250730   ⟹   XP_030106590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250731   ⟹   XP_030106591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,915,125 - 3,944,368 (+)NCBI
GRCm38193,864,801 - 3,893,923 (+)NCBI
Sequence:
RefSeq Acc Id: XR_388248
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39193,901,585 - 3,944,368 (+)NCBI
GRCm38193,851,585 - 3,893,923 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001258425 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397062 (Get FASTA)   NCBI Sequence Viewer  
  NP_038518 (Get FASTA)   NCBI Sequence Viewer  
  XP_006531711 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246901 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173537 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173538 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106584 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106585 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106586 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106587 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106588 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106589 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106590 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106591 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04719 (Get FASTA)   NCBI Sequence Viewer  
  AAH56758 (Get FASTA)   NCBI Sequence Viewer  
  AAR89357 (Get FASTA)   NCBI Sequence Viewer  
  BAA24898 (Get FASTA)   NCBI Sequence Viewer  
  BAA88153 (Get FASTA)   NCBI Sequence Viewer  
  BAA88154 (Get FASTA)   NCBI Sequence Viewer  
  BAB29191 (Get FASTA)   NCBI Sequence Viewer  
  BAC34841 (Get FASTA)   NCBI Sequence Viewer  
  BAC35539 (Get FASTA)   NCBI Sequence Viewer  
  BAE38793 (Get FASTA)   NCBI Sequence Viewer  
  BAE38910 (Get FASTA)   NCBI Sequence Viewer  
  EDL32956 (Get FASTA)   NCBI Sequence Viewer  
  EDL32957 (Get FASTA)   NCBI Sequence Viewer  
  EDL32958 (Get FASTA)   NCBI Sequence Viewer  
  EDL32959 (Get FASTA)   NCBI Sequence Viewer  
  EDL32960 (Get FASTA)   NCBI Sequence Viewer  
  EDL32961 (Get FASTA)   NCBI Sequence Viewer  
  EDL32962 (Get FASTA)   NCBI Sequence Viewer  
  EDL32963 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025760
  ENSMUSP00000025760.7
  ENSMUSP00000071933
  ENSMUSP00000071933.7
  ENSMUSP00000115861.2
  ENSMUSP00000116427.2
  ENSMUSP00000119493.2
  ENSMUSP00000119919.2
GenBank Protein O54804 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_038518   ⟸   NM_013490
- Peptide Label: isoform 1
- UniProtKB: Q3TLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258425   ⟸   NM_001271496
- Peptide Label: isoform 3
- UniProtKB: Q9CXP3 (UniProtKB/Swiss-Prot),   Q8BPW6 (UniProtKB/Swiss-Prot),   Q8BPL3 (UniProtKB/Swiss-Prot),   G5E853 (UniProtKB/Swiss-Prot),   Q9QX56 (UniProtKB/Swiss-Prot),   O54804 (UniProtKB/Swiss-Prot),   Q3TLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531711   ⟸   XM_006531648
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246901   ⟸   XM_011248599
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173537   ⟸   XM_017318048
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173538   ⟸   XM_017318049
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030106584   ⟸   XM_030250724
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106586   ⟸   XM_030250726
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106585   ⟸   XM_030250725
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106588   ⟸   XM_030250728
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106587   ⟸   XM_030250727
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106590   ⟸   XM_030250730
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106589   ⟸   XM_030250729
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106591   ⟸   XM_030250731
- Peptide Label: isoform X2
- UniProtKB: Q99KD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000119493   ⟸   ENSMUST00000125640
RefSeq Acc Id: ENSMUSP00000071933   ⟸   ENSMUST00000072055
RefSeq Acc Id: ENSMUSP00000116427   ⟸   ENSMUST00000139655
RefSeq Acc Id: ENSMUSP00000119919   ⟸   ENSMUST00000128694
RefSeq Acc Id: ENSMUSP00000115861   ⟸   ENSMUST00000153343
RefSeq Acc Id: ENSMUSP00000025760   ⟸   ENSMUST00000025760
RefSeq Acc Id: NP_001397062   ⟸   NM_001410133
- Peptide Label: isoform 4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54804-F1-model_v2 AlphaFold O54804 1-453 view protein structure

Promoters
RGD ID:6829911
Promoter ID:MM_KWN:25937
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000073550,   OTTMUST00000073551,   OTTMUST00000073553,   OTTMUST00000073594,   OTTMUST00000073595,   OTTMUST00000073596,   UC008FXE.1,   UC008FXF.1,   UC008FXH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36193,850,996 - 3,851,947 (+)MPROMDB
RGD ID:13678350
Promoter ID:EPDNEW_M23324
Type:multiple initiation site
Name:Chka_1
Description:Mus musculus choline kinase alpha , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38193,851,832 - 3,851,892EPDNEW
RGD ID:6829908
Promoter ID:MM_KWN:25939
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000073597
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36193,873,661 - 3,874,161 (+)MPROMDB
RGD ID:6829907
Promoter ID:MM_KWN:25941
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung,   Spleen
Transcripts:OTTMUST00000073601
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36193,891,216 - 3,892,092 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107760 AgrOrtholog
Ensembl Genes ENSMUSG00000024843 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025760 ENTREZGENE
  ENSMUST00000025760.13 UniProtKB/Swiss-Prot
  ENSMUST00000072055 ENTREZGENE
  ENSMUST00000072055.13 UniProtKB/Swiss-Prot
  ENSMUST00000125640.2 UniProtKB/TrEMBL
  ENSMUST00000128694 ENTREZGENE
  ENSMUST00000128694.8 UniProtKB/TrEMBL
  ENSMUST00000139655.8 UniProtKB/TrEMBL
  ENSMUST00000153343.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1200.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12660 UniProtKB/Swiss-Prot
MGD MGI:107760 ENTREZGENE
NCBI Gene 12660 ENTREZGENE
PANTHER CHOLINE KINASE ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHOLINE/ETHANOALAMINE KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Choline_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chka PhenoGen
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CHKA_MOUSE UniProtKB/Swiss-Prot
  D6RG40_MOUSE UniProtKB/TrEMBL
  F6S062_MOUSE UniProtKB/TrEMBL
  F7AYX1_MOUSE UniProtKB/TrEMBL
  G5E853 ENTREZGENE
  O54804 ENTREZGENE
  Q3TL82_MOUSE UniProtKB/TrEMBL
  Q3TLJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q5J2U5_MOUSE UniProtKB/TrEMBL
  Q8BPL3 ENTREZGENE
  Q8BPW6 ENTREZGENE
  Q99KD4 ENTREZGENE, UniProtKB/TrEMBL
  Q9CXP3 ENTREZGENE
  Q9QX56 ENTREZGENE
UniProt Secondary G5E853 UniProtKB/Swiss-Prot
  Q8BPL3 UniProtKB/Swiss-Prot
  Q8BPW6 UniProtKB/Swiss-Prot
  Q9CXP3 UniProtKB/Swiss-Prot
  Q9QX56 UniProtKB/Swiss-Prot