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ONTOLOGY REPORT - ANNOTATIONS

Term:non-motile cilium
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Accession:GO:0097730 term browser browse the term
Definition:A cilium which may have a variable array of axonemal microtubules but does not contain molecular motors.
Synonyms:exact_synonym: immotile cilium;   nonmotile cilium
 related_synonym: immotile primary cilium;   nonmotile primary cilia;   nonmotile primary cilium;   sensory cilium
 alt_id: GO:0031513


show annotations for term's descendants           Sort by:
non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISS
ISO		 GO_REF:0000024
(PMID:19625297), (PMID:19718039)		 UniProt
RGD		 PMID:19625297 PMID:19718039 GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Ano2 anoctamin 2 located_in ISO (PMID:21516098) RGD PMID:21516098 NCBI chr 4:158,514,200...158,855,639
Ensembl chr 4:158,496,014...158,855,651 		JBrowse link
G Arl13a ADP ribosylation factor like GTPase 13A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,380,370...97,406,704
Ensembl chr  X:97,380,390...97,406,702 		JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:17574030) RGD PMID:17574030 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Cep89 centrosomal protein 89 located_in ISO (PMID:23789104) RGD PMID:23789104 NCBI chr 1:88,058,211...88,100,114
Ensembl chr 1:88,058,227...88,100,112 		JBrowse link
G Cfap69 cilia and flagella associated protein 69 located_in
is_active_in		 ISO
IBA		 (MGI:5906062|PMID:28495971)
GO_REF:0000033		 RGD
GO_Central		 PMID:28495971 GO_REF:0000033 MGI:5906062 NCBI chr 4:28,379,604...28,452,562
Ensembl chr 4:28,375,996...28,450,698 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 located_in IDA PMID:23300604 MGI PMID:23300604 RGD:10448945 NCBI chr 8:73,696,394...73,711,315
Ensembl chr 8:73,698,103...73,711,292 		JBrowse link
G Drd1 dopamine receptor D1 located_in ISO (PMID:20531939) RGD PMID:20531939 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Drd2 dopamine receptor D2 located_in ISO (PMID:20531939) RGD PMID:20531939 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Drd5 dopamine receptor D5 located_in IEA
ISO		 GO_REF:0000107
(PMID:20531939)		 Ensembl
RGD		 PMID:20531939 GO_REF:0000107 NCBI chr14:72,487,950...72,491,050
Ensembl chr14:72,489,347...72,490,774 		JBrowse link
G Erich3 glutamate-rich 3 located_in ISO (PMID:31712586) RGD PMID:31712586 NCBI chr 2:243,615,777...243,717,973
Ensembl chr 2:243,615,872...243,715,317 		JBrowse link
G Galr3 galanin receptor 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:24316073)		 Ensembl
RGD		 PMID:24316073 GO_REF:0000107 NCBI chr 7:110,603,525...110,608,429
Ensembl chr 7:110,605,226...110,607,685 		JBrowse link
G Glis2 GLIS family zinc finger 2 located_in ISO (PMID:17618285) RGD PMID:17618285 NCBI chr10:10,951,157...10,978,524
Ensembl chr10:10,951,371...10,971,578 		JBrowse link
G Gpr83 G protein-coupled receptor 83 located_in IEA
ISO		 GO_REF:0000107
(PMID:24316073)		 Ensembl
RGD		 PMID:24316073 GO_REF:0000107 NCBI chr 8:11,693,540...11,704,028
Ensembl chr 8:11,693,540...11,704,028 		JBrowse link
G Gucy2d guanylate cyclase 2D located_in IDA PMID:11580282 UniProt PMID:11580282 RGD:15023466 NCBI chr 1:152,739,775...152,774,474
Ensembl chr 1:152,739,775...152,774,473 		JBrowse link
G Hyls1 HYLS1, centriolar and ciliogenesis associated is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:33,912,692...33,921,760
Ensembl chr 8:33,912,692...33,921,760 		JBrowse link
G Ift122 intraflagellar transport 122 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:24009529) RGD PMID:24009529 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift88 intraflagellar transport 88 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:16254602)		 GO_Central
RGD		 PMID:16254602 GO_REF:0000033 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Mchr1 melanin-concentrating hormone receptor 1 located_in ISO (MGI:3778303|PMID:18334641), (PMID:23029470), (PMID:23351594) RGD PMID:18334641 PMID:23029470 PMID:23351594 MGI:3778303 NCBI chr 7:112,761,554...112,764,746
Ensembl chr 7:112,761,554...112,764,032 		JBrowse link
G Mdm1 Mdm1 nuclear protein located_in ISO (PMID:23300604) RGD PMID:23300604 NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mlf1 myeloid leukemia factor 1 located_in ISO (PMID:23300604) RGD PMID:23300604 NCBI chr 2:151,648,492...151,681,654
Ensembl chr 2:151,648,511...151,681,652 		JBrowse link
G Nphp4 nephrocystin 4 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Npy2r neuropeptide Y receptor Y2 located_in ISO (PMID:24316073) RGD PMID:24316073 NCBI chr 2:167,901,999...167,912,165
Ensembl chr 2:167,903,879...167,905,024 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 NOT|located_in ISO (PMID:17314247) RGD PMID:17314247 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pcm1 pericentriolar material 1 NOT|located_in ISO (PMID:17574030) RGD PMID:17574030 NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091 		JBrowse link
G Pgr15l G protein-coupled receptor 15-like located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr  X:61,983,518...61,989,030
Ensembl chr  X:61,983,518...61,989,030 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting located_in ISO (PMID:24336289) RGD PMID:24336289 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel located_in ISO (PMID:15123714)
(PMID:12062067)		 RGD PMID:12062067 PMID:15123714 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel located_in ISO (PMID:24336289) RGD PMID:24336289 NCBI chr 1:243,032,891...243,070,031
Ensembl chr 1:243,032,913...243,070,031 		JBrowse link
G Qrfpr pyroglutamylated RFamide peptide receptor located_in ISO (PMID:24316073) RGD PMID:24316073 NCBI chr 2:119,053,083...119,096,864
Ensembl chr 2:119,053,511...119,096,792 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in ISO
IEA		 (PMID:17574030), (PMID:24648492)
(PMID:19625297), (PMID:20592197)
GO_REF:0000107		 RGD
Ensembl		 PMID:17574030 PMID:19625297 PMID:20592197 PMID:24648492 GO_REF:0000107 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:20592197) RGD PMID:20592197 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386 		JBrowse link
G Septin7 septin 7 located_in ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 8:23,719,448...23,783,247
Ensembl chr 8:23,716,030...23,783,243 		JBrowse link
G Septin9 septin 9 located_in ISO
IEA		 (PMID:23572511)
GO_REF:0000107		 RGD
Ensembl		 PMID:23572511 GO_REF:0000107 NCBI chr10:102,409,798...102,579,056
Ensembl chr10:102,409,711...102,579,055 		JBrowse link
G Sstr3 somatostatin receptor 3 located_in ISO (MGI:3778303|PMID:18334641), (PMID:22832925), (PMID:23029470), (PMID:23351594) RGD PMID:18334641 PMID:22832925 PMID:23029470 PMID:23351594 MGI:3778303 NCBI chr 7:110,092,563...110,109,043
Ensembl chr 7:110,092,575...110,099,769 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO (PMID:20592197) RGD PMID:20592197 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433 		JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (MGI:4835147|PMID:16957054) RGD PMID:16957054 MGI:4835147 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C13h1orf115 similar to human chromosome 1 open reading frame 115 located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr13:96,422,308...96,432,044
Ensembl chr13:96,422,302...96,432,068 		JBrowse link
G Cfap96 cilia and flagella associated protein 96 located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr16:46,291,075...46,315,616
Ensembl chr16:46,291,311...46,315,625 		JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr10:72,767,035...72,785,824
Ensembl chr10:72,767,035...72,785,805 		JBrowse link
G Enkd1 enkurin domain containing 1 located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr19:33,592,074...33,596,552
Ensembl chr19:33,592,078...33,596,545 		JBrowse link
G Ift80 intraflagellar transport 80 is_active_in ISO (PMID:26996322) RGD PMID:26996322 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Iftap intraflagellar transport associated protein is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26703212)		 GO_Central
RGD		 PMID:26703212 GO_REF:0000033 NCBI chr 3:87,812,068...87,906,517
Ensembl chr 3:87,817,408...87,906,547 		JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr17:73,329,461...73,346,359
Ensembl chr17:73,329,082...73,346,409 		JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in ISO (PMID:24586199) RGD PMID:24586199 NCBI chr 9:22,547,396...23,037,443
Ensembl chr 9:22,549,513...23,037,381 		JBrowse link
G Smo smoothened, frizzled class receptor located_in IEA
ISO		 GO_REF:0000107
(PMID:26996322)		 Ensembl
RGD		 PMID:26996322 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 located_in ISO (PMID:17499049) RGD PMID:17499049 NCBI chr 9:76,221,659...76,258,219
Ensembl chr 9:76,221,796...76,251,301 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) RGD PMID:17499049 NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 located_in ISO (PMID:17499049) RGD PMID:17499049 NCBI chr10:81,081,985...81,118,009
Ensembl chr10:81,091,975...81,127,234 		JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) RGD PMID:17499049 NCBI chr 2:235,765,786...235,889,047
Ensembl chr 2:235,765,835...235,885,047 		JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (PMID:20889716) RGD PMID:20889716 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) RGD PMID:10813773 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in
is_active_in		 ISO
IBA		 (PMID:9620085)
GO_REF:0000033
(MGI:6437034|PMID:9620085)		 RGD
GO_Central		 PMID:9620085 GO_REF:0000033 MGI:6437034 NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in
is_active_in		 ISO
IBA		 (PMID:9620085)
GO_REF:0000033		 RGD
GO_Central		 PMID:9620085 GO_REF:0000033 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:24619649) RGD PMID:24619649 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA
ISO		 GO_REF:0000107
(PMID:10813773)		 Ensembl
RGD		 PMID:10813773 GO_REF:0000107 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in ISO (PMID:25616964) RGD PMID:25616964 NCBI chr 6:23,749,700...23,758,424
Ensembl chr 6:23,749,757...23,758,169 		JBrowse link
G Prkca protein kinase C, alpha located_in ISO (PMID:10813773) RGD PMID:10813773 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 located_in ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 6:121,279,590...121,419,811
Ensembl chr 6:121,280,031...121,414,949 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) RGD PMID:20375344 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567 		JBrowse link
kinociliary basal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc14a cell division cycle 14A located_in ISO (MGI:6118860|PMID:29293958) RGD PMID:29293958 MGI:6118860 NCBI chr 2:204,225,540...204,380,927
Ensembl chr 2:204,225,540...204,380,927 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:25605782) RGD PMID:25605782 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Mkks MKKS centrosomal shuttling protein is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:22446187)		 GO_Central
RGD		 PMID:22446187 GO_REF:0000033 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
kinocilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc14a cell division cycle 14A located_in ISO (MGI:6118860|PMID:29293958) RGD PMID:29293958 MGI:6118860 NCBI chr 2:204,225,540...204,380,927
Ensembl chr 2:204,225,540...204,380,927 		JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO		 GO_REF:0000107
(PMID:15882574)		 Ensembl
RGD		 PMID:15882574 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Dcdc2 doublecortin domain containing 2 located_in
is_active_in		 IDA
IBA		 PMID:25601850
GO_REF:0000033		 GO_Central PMID:25601850 GO_REF:0000033, RGD:10412291 NCBI chr17:39,845,952...40,031,781
Ensembl chr17:39,845,952...40,030,743 		JBrowse link
G Elmod3 ELMO domain containing 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:104,614,665...104,653,122
Ensembl chr 4:104,614,676...104,653,053 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 located_in
is_active_in		 ISO
IBA		 (MGI:4421424|PMID:20137774)
GO_REF:0000033		 RGD
GO_Central		 PMID:20137774 GO_REF:0000033 MGI:4421424 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:18066062) RGD PMID:18066062 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kncn kinocilin is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15855039), (PMID:20510926)		 GO_Central
RGD		 PMID:15855039 PMID:20510926 GO_REF:0000033 NCBI chr 5:129,363,464...129,366,907
Ensembl chr 5:129,363,785...129,366,738 		JBrowse link
G Rac1 Rac family small GTPase 1 located_in ISO (PMID:23533177) RGD PMID:23533177 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rsph9 radial spoke head component 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,840,115...14,852,950
Ensembl chr 9:14,840,115...14,860,062 		JBrowse link
G Strc stereocilin located_in
is_active_in		 ISO
IBA		 (MGI:5430850|PMID:21165971)
GO_REF:0000033		 RGD
GO_Central		 PMID:21165971 GO_REF:0000033 MGI:5430850 NCBI chr 3:108,335,920...108,355,114
Ensembl chr 3:108,335,747...108,354,134 		JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 located_in ISO (PMID:23533177) RGD PMID:23533177 NCBI chr11:29,031,347...29,380,153
Ensembl chr11:29,031,348...29,159,901 		JBrowse link
non-motile cilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga2 cyclic nucleotide gated channel subunit alpha 2 located_in IDA
ISS		 PMID:10377344
GO_REF:0000024		 UniProt PMID:10377344 GO_REF:0000024, RGD:632392 NCBI chr  X:149,696,999...149,715,051
Ensembl chr  X:149,696,997...149,715,051 		JBrowse link
G Cnga4 cyclic nucleotide gated channel subunit alpha 4 located_in IDA
ISS		 PMID:10377344
GO_REF:0000024		 UniProt PMID:10377344 GO_REF:0000024, RGD:632392 NCBI chr 1:159,752,357...159,756,369
Ensembl chr 1:159,752,357...159,756,375 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in ISS
IDA		 GO_REF:0000024
PMID:10377344		 UniProt PMID:10377344 GO_REF:0000024, RGD:632392 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) RGD PMID:26373354 NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (MGI:5438885|PMID:22791751) RGD PMID:22791751 MGI:5438885 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO
ISS		 (PMID:26593283)
(MGI:5816430|PMID:26593283)
GO_REF:0000024		 RGD
UniProt		 PMID:26593283 GO_REF:0000024 MGI:5816430 NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr13:88,754,521...88,979,363
Ensembl chr13:88,754,626...89,097,111 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:31637240) RGD PMID:31637240 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC131360.2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr18:29,185,443...29,187,845 JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) RGD PMID:17906286 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Alpk1 alpha-kinase 1 located_in ISO (MGI:6717246|PMID:30967659) RGD PMID:30967659 MGI:6717246 NCBI chr 2:216,126,939...216,247,180
Ensembl chr 2:216,128,825...216,247,157 		JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12417528)		 UniProt
Ensembl
RGD		 PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cetn1 centrin 1 located_in ISO (MGI:6393223|PMID:30120214), (PMID:15347651) RGD PMID:15347651 PMID:30120214 MGI:6393223 NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293 		JBrowse link
G Cetn2 centrin 2 located_in ISO (PMID:15347651) RGD PMID:15347651 NCBI chr  X:150,769,944...150,774,833
Ensembl chr  X:150,769,953...150,774,919 		JBrowse link
G Cetn3 centrin 3 located_in ISO (PMID:15347651), (PMID:22031837), (PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (MGI:5770162|PMID:26974433) RGD PMID:26974433 MGI:5770162 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:22940612
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (PMID:24833722)
GO_REF:0000033
GO_REF:0000107
(PMID:22940612)		 RGD
GO_Central
Ensembl		 PMID:22791751 PMID:22940612 PMID:24833722 PMID:22940612 GO_REF:0000033 GO_REF:0000107 MGI:5438885 MGI:5442623, RGD:8553427 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:17881533) RGD PMID:17881533 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:20368623), (PMID:24619649) RGD PMID:20368623 PMID:24619649 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 RGD PMID:21307337 PMID:31637240 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:31637240)
(PMID:20368623)		 RGD PMID:20368623 PMID:31637240 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (PMID:31637240)
(PMID:20368623)		 RGD PMID:20368623 PMID:31637240 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (MGI:3839506|PMID:19208653), (PMID:20368623) RGD PMID:19208653 PMID:20368623 MGI:3839506 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066)
(MGI:3763297|PMID:15723066)		 RGD PMID:15723066 MGI:3763297 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093 		JBrowse link
G Kiaa1549 KIAA1549 homolog located_in ISO (MGI:6393223|PMID:30120214) RGD PMID:30120214 MGI:6393223 NCBI chr 4:66,840,674...66,968,407
Ensembl chr 4:66,760,162...66,968,436 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638 		JBrowse link
G Kif3a kinesin family member 3a located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lca5 lebercilin LCA5 located_in ISO
IDA		 (PMID:21606596)
(MGI:5050784|PMID:21606596)
PMID:17546029		 RGD PMID:21606596 PMID:17546029 MGI:5050784, RGD:14397561 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956 		JBrowse link
G Mak male germ cell-associated kinase located_in IEA
ISO		 GO_REF:0000107
(PMID:21148103)		 Ensembl
RGD		 PMID:21148103 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Myo7a myosin VIIA located_in ISO (PMID:10414956) RGD PMID:10414956 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:4821072|PMID:16885411) RGD PMID:16885411 MGI:4821072 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) RGD PMID:21078623 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Pcdhb22 protocadherin beta 22 located_in ISO (PMID:18279309) RGD PMID:18279309 NCBI chr18:29,223,028...29,229,132
Ensembl chr18:29,223,149...29,225,536 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11767049)
(MGI:2676521|PMID:14507858), (PMID:11773008)		 RGD PMID:11767049 PMID:11773008 PMID:14507858 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) RGD PMID:10725384 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:5608598|PMID:25398945) RGD PMID:25398945 MGI:5608598 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpgrip1l Rpgrip1-like is_active_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:17558407 GO_REF:0000033, RGD:11537356 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Septin2 septin 2 located_in ISO
IEA		 (PMID:23572511)
GO_REF:0000107		 RGD
Ensembl		 PMID:23572511 GO_REF:0000107 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISS
ISO		 GO_REF:0000024
(MGI:5608598|PMID:25398945)		 UniProt
RGD		 PMID:25398945 GO_REF:0000024 MGI:5608598 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324 		JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:14,098,855...14,100,043
Ensembl chr 9:14,098,868...14,100,042 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) RGD PMID:20375344 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in		 ISO
IBA		 (PMID:21159800)
GO_REF:0000033
(MGI:4939557|PMID:21159800)		 RGD
GO_Central		 PMID:21159800 GO_REF:0000033 MGI:4939557 NCBI chr 5:55,388,033...55,399,937
Ensembl chr 5:55,387,632...55,399,937 		JBrowse link
G Tsga10ip testis specific 10 interacting protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,700,576...202,714,668
Ensembl chr 1:202,700,578...202,714,798 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (MGI:2677624|PMID:14520415) RGD PMID:14520415 MGI:2677624 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:17906286) RGD PMID:17906286 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Ush2a usherin located_in IDA
ISO
IEA		 (PMID:17906286), (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Whrn whirlin located_in IDA
ISO
IEA		 (PMID:17906286), (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC131360.2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr18:29,185,443...29,187,845 JBrowse link
G Rho rhodopsin located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:25664179)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:25664179 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:5660490 (PMID:29899041)		 Ensembl
GO_Central
RGD		 PMID:29899041 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 located_in ISO (MGI:1274766|PMID:9202155), (PMID:23943788) RGD PMID:9202155 PMID:23943788 MGI:1274766 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069 		JBrowse link
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:20592197) RGD PMID:20592197 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arr3 arrestin 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:10725384), (PMID:12486395)		 Ensembl
RGD		 PMID:10725384 PMID:12486395 GO_REF:0000107 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396 		JBrowse link
G Bsg basigin located_in ISS
ISO		 GO_REF:0000024
(MGI:6436439|PMID:25957687)		 UniProt
RGD		 PMID:25957687 GO_REF:0000024 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F IDA RGD PMID:11526344 RGD:632484 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (MGI:6254746|PMID:28005958) RGD PMID:28005958 MGI:6254746 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cerkl ceramide kinase-like located_in ISO (PMID:23142158) RGD PMID:23142158 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) RGD PMID:27548899 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5487486|PMID:23023331)		 UniProt
RGD		 PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:10725384), (PMID:15634774), (PMID:20592197) RGD PMID:10725384 PMID:15634774 PMID:20592197 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) RGD PMID:15634774 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:22183407)		 GO_Central
RGD		 PMID:22183407 GO_REF:0000033 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15634774)		 GO_Central
RGD		 PMID:15634774 GO_REF:0000033 NCBI chr 5:32,746,988...32,995,121
Ensembl chr 5:32,746,988...32,995,121 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 located_in ISO (PMID:15316081) RGD PMID:15316081 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO		 (MGI:6383261|PMID:31696965), (PMID:18367617), (PMID:20592197)
(PMID:2534964)		 RGD PMID:2534964 PMID:18367617 PMID:20592197 PMID:31696965 PMID:11931744 More... MGI:6383261, RGD:1599009, RGD:6893629 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:2534964)		 GO_Central
RGD		 PMID:2534964 PMID:17591908 GO_REF:0000033, RGD:2302146 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gnat3 G protein subunit alpha transducin 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283 		JBrowse link
G Gnb1 G protein subunit beta 1 located_in ISO (PMID:18367617) RGD PMID:18367617 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 PMID:10396627 RGD:1599009, RGD:6893629 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) RGD PMID:22183407 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IDA
ISO		 (PMID:22183407) RGD PMID:22183407 PMID:9620085 RGD:1599354 NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B IDA RGD PMID:9620085 RGD:1599354 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Guca2b guanylate cyclase activator 2B located_in ISO (PMID:22183407) RGD PMID:22183407 NCBI chr 5:133,246,891...133,248,941
Ensembl chr 5:133,246,909...133,248,966 		JBrowse link
G Gucy2e guanylate cyclase 2E located_in ISO (PMID:7912093) RGD PMID:7912093 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067 		JBrowse link
G Hnf1a HNF1 homeobox A located_in ISO MGI:96770 (PMID:10090727) RGD PMID:10090727 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:21307337) RGD PMID:21307337 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722 		JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (MGI:3763297|PMID:15723066) RGD PMID:15723066 MGI:3763297 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lyar Ly1 antibody reactive located_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:6107438|PMID:25735755)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:25735755 GO_REF:0000024 GO_REF:0000107 MGI:6107438 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5573004|PMID:24608321)		 UniProt
RGD		 PMID:24608321 GO_REF:0000024 MGI:5573004 NCBI chr 4:14,386,389...15,870,036
Ensembl chr 4:14,386,399...15,870,240 		JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21148103)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21148103 GO_REF:0000024 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Map1a microtubule-associated protein 1A located_in ISO (PMID:24664738) RGD PMID:24664738 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899 		JBrowse link
G Map1b microtubule-associated protein 1B located_in ISO (PMID:24664738) RGD PMID:24664738 NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase IDA RGD PMID:11861639 RGD:1299193 NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Myo3b myosin IIIB located_in ISO (PMID:19332056) RGD PMID:19332056 NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Myo5a myosin VA located_in ISO (PMID:14978221) RGD PMID:14978221 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737)
(MGI:81971|PMID:8842737)		 RGD PMID:8842737 MGI:81971 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in IEA
ISO		 GO_REF:0000107
(MGI:2180422|PMID:11964381)		 Ensembl
RGD		 PMID:11964381 GO_REF:0000107 MGI:2180422 NCBI chr 8:120,017,749...120,184,821
Ensembl chr 8:120,017,524...120,183,833 		JBrowse link
G Nup42 nucleoporin 42 located_in ISO (PMID:22183407) RGD PMID:22183407 NCBI chr 4:10,985,554...11,002,591
Ensembl chr 4:10,985,554...11,002,591 		JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in ISO
IEA		 (PMID:22543976)
GO_REF:0000107		 RGD
Ensembl		 PMID:22543976 GO_REF:0000107 NCBI chr  X:127,089,508...127,140,362
Ensembl chr  X:127,089,590...127,140,362 		JBrowse link
G Opn1mw opsin 1, medium wave sensitive located_in
is_active_in		 IDA
ISO
IBA		 (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:23351594), (PMID:23386608)
GO_REF:0000033		 RGD
GO_Central		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:23351594 PMID:23386608 More... GO_REF:0000033, RGD:6893562 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in
is_active_in		 IDA
ISO
IBA		 (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:22183407), (PMID:23351594), (PMID:23386608), (PMID:26420485)
GO_REF:0000033		 RGD
GO_Central		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:22183407 PMID:23351594 More... GO_REF:0000033, RGD:6893562 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Opn3 opsin 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847 		JBrowse link
G Pcare photoreceptor cilium actin regulator is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:23,749,700...23,758,424
Ensembl chr 6:23,749,757...23,758,169 		JBrowse link
G Pcdh15 protocadherin related 15 located_in ISO (PMID:14570705) RGD PMID:14570705 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pdc phosducin is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18367617)		 GO_Central
RGD		 PMID:18367617 GO_REF:0000033 NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754 		JBrowse link
G Pde6b phosphodiesterase 6B located_in ISO (PMID:22183407) RGD PMID:22183407 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Prcd photoreceptor disc component located_in ISO (MGI:5819338|PMID:23672200) RGD PMID:23672200 MGI:5819338 NCBI chr10:101,887,192...101,907,647 JBrowse link
G Prom1 prominin 1 located_in ISO (MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:3838023 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Prph peripherin located_in ISO (PMID:22183407) RGD PMID:22183407 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136 		JBrowse link
G Prph2 peripherin 2 located_in ISO (PMID:22183407), (PMID:26420485), (PMID:28053051) RGD PMID:22183407 PMID:26420485 PMID:28053051 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:12355421)		 Ensembl
RGD		 PMID:12355421 GO_REF:0000107 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586 		JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K located_in ISO (PMID:18308476) RGD PMID:18308476 NCBI chr 1:16,738,896...17,236,687
Ensembl chr 1:16,850,576...17,103,605 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (MGI:2180422|PMID:11964381) RGD PMID:11964381 MGI:2180422 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Rho rhodopsin located_in
is_active_in		 IDA
ISO
IBA		 (PMID:10725384), (PMID:12651948), (PMID:20592197), (PMID:21212183), (PMID:22183407), (PMID:22869374), (PMID:23351594), (PMID:23943788), (PMID:25224828), (PMID:26420485)
GO_REF:0000033
(PMID:11767049), (PMID:23704327)		 RGD
GO_Central		 PMID:10725384 PMID:11767049 PMID:12651948 PMID:20592197 PMID:21212183 More... GO_REF:0000033, RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (PMID:20592197), (PMID:22183407), (PMID:26420485) RGD PMID:20592197 PMID:22183407 PMID:26420485 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) RGD PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) RGD PMID:12140192 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599 		JBrowse link
G Sag S-antigen visual arrestin located_in
is_active_in		 IDA
ISO
IEA
IBA		 (PMID:22869374)
GO_REF:0000107
GO_REF:0000033
(PMID:3720866)		 RGD
Ensembl
GO_Central		 PMID:3720866 PMID:22869374 PMID:10396627 GO_REF:0000033 GO_REF:0000107, RGD:6893629 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5306573|PMID:19299912)		 BHF-UCL
RGD		 PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394 		JBrowse link
G Stx3 syntaxin 3 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:7258358|PMID:33974130)		 UniProt
Ensembl
RGD		 PMID:33974130 GO_REF:0000024 GO_REF:0000107 MGI:7258358 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805 		JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248 		JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in IDA
ISO		 (PMID:14578428), (PMID:17906286) RGD PMID:14578428 PMID:17906286 PMID:14578428 RGD:1303964 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Vcan versican located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin-related family member 1 located_in ISO
IEA		 (MGI:3814988|PMID:18654668)
GO_REF:0000107		 RGD
Ensembl		 PMID:18654668 GO_REF:0000107 MGI:3814988 NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA
ISO		 GO_REF:0000107
(MGI:3814988|PMID:18654668)		 Ensembl
RGD		 PMID:18654668 GO_REF:0000107 MGI:3814988 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065 		JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Gucy2e guanylate cyclase 2E located_in IEA
ISO
IDA		 GO_REF:0000107
(MGI:5049799|PMID:21598940)
PMID:9153227		 Ensembl
RGD		 PMID:21598940 PMID:9153227 GO_REF:0000107 MGI:5049799, RGD:1599625 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067 		JBrowse link
G Pde6a phosphodiesterase 6A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pde6g phosphodiesterase 6G is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:105,721,502...105,726,150
Ensembl chr10:105,721,682...105,726,719 		JBrowse link
G Pde6h phosphodiesterase 6H is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513 		JBrowse link
G Prcd photoreceptor disc component located_in ISO (PMID:27613864)
(MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)		 RGD PMID:27509380 PMID:27613864 MGI:5812604 MGI:6271388 NCBI chr10:101,887,192...101,907,647 JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Prph peripherin located_in ISO (PMID:10414956) RGD PMID:10414956 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136 		JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) RGD PMID:15790565 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252 		JBrowse link
G Rho rhodopsin located_in IDA
IEA
ISO
ISS		 GO_REF:0000107
(PMID:19934218)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:19934218 PMID:2209754 GO_REF:0000024 GO_REF:0000107, RGD:6893561 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (MGI:3814988|PMID:18654668) RGD PMID:18654668 MGI:3814988 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO
IEA		 (PMID:26373354)
GO_REF:0000107		 RGD
Ensembl		 PMID:26373354 GO_REF:0000107 NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687 		JBrowse link
G Cep290 centrosomal protein 290 is_active_in ISO MGI:2144877 (PMID:29899041) RGD PMID:29899041 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Gucy2f guanylate cyclase 2F located_in ISS
ISO		 GO_REF:0000024
(MGI:4867355|PMID:21078983)		 UniProt
RGD		 PMID:21078983 GO_REF:0000024 MGI:4867355 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Rho rhodopsin located_in IEA
ISO		 GO_REF:0000107
(PMID:19332056), (PMID:21444805), (PMID:23178122)		 Ensembl
RGD		 PMID:19332056 PMID:21444805 PMID:23178122 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
MGI:2384917|MGI:5660490 (PMID:29899041)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:29899041 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) RGD PMID:20375344 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20624
    cellular anatomical entity 20384
      cell projection 2621
        plasma membrane bounded cell projection 2539
          cilium 799
            non-motile cilium 179
              9+0 non-motile cilium + 135
              9+2 non-motile cilium + 13
              non-motile cilium membrane 3
paths to the root