Pcm1 (pericentriolar material 1) - Rat Genome Database

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Gene: Pcm1 (pericentriolar material 1) Rattus norvegicus
Analyze
Symbol: Pcm1
Name: pericentriolar material 1
RGD ID: 620901
Description: Predicted to enable molecular adaptor activity and molecular function activator activity. Involved in protein localization to centrosome. Predicted to be located in several cellular components, including ciliary transition zone; nucleus; and pericentriolar material. Predicted to be part of protein-containing complex. Predicted to be active in centriolar satellite; centriole; and ciliary basal body. Predicted to colocalize with centrosome. Orthologous to human PCM1 (pericentriolar material 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21651,008,315 - 51,105,261 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,328,044 - 56,424,950 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01659,727,321 - 59,824,084 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01654,961,981 - 55,058,887 (-)NCBIRnor_WKY
Rnor_6.01654,040,721 - 54,137,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,040,721 - 54,137,660 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01653,754,432 - 53,851,417 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,321,572 - 54,419,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,321,927 - 54,330,026 (-)NCBI
Celera1648,903,540 - 49,000,197 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
clozapine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
flavonoids  (EXP)
folic acid  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
josamycin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Arrest of cell cycle progression during first interphase in murine zygotes microinjected with anti-PCM-1 antibodies. Balczon R, etal., Cell Motil Cytoskeleton 2002 Jul;52(3):183-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Recruitment of PCM1 to the centrosome by the cooperative action of DISC1 and BBS4: a candidate for psychiatric illnesses. Kamiya A, etal., Arch Gen Psychiatry. 2008 Sep;65(9):996-1006. doi: 10.1001/archpsyc.65.9.996.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10579718   PMID:12571289   PMID:15616553   PMID:17574030   PMID:19946888   PMID:20152126   PMID:20719959   PMID:21399614   PMID:21725312   PMID:21985783   PMID:22031837   PMID:22333836  
PMID:22797915   PMID:23533177   PMID:23789104   PMID:24415959   PMID:24421332   PMID:24469809   PMID:24550735   PMID:24648492   PMID:24816561   PMID:25697395   PMID:27979967  


Genomics

Comparative Map Data
Pcm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21651,008,315 - 51,105,261 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,328,044 - 56,424,950 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01659,727,321 - 59,824,084 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01654,961,981 - 55,058,887 (-)NCBIRnor_WKY
Rnor_6.01654,040,721 - 54,137,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,040,721 - 54,137,660 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01653,754,432 - 53,851,417 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,321,572 - 54,419,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,321,927 - 54,330,026 (-)NCBI
Celera1648,903,540 - 49,000,197 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
PCM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38817,922,988 - 18,029,948 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl817,922,842 - 18,029,948 (+)EnsemblGRCh38hg38GRCh38
GRCh37817,780,497 - 17,887,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,824,646 - 17,931,737 (+)NCBINCBI36Build 36hg18NCBI36
Build 34817,824,778 - 17,929,764NCBI
Celera816,746,248 - 16,853,370 (+)NCBICelera
Cytogenetic Map8p22NCBI
HuRef816,324,235 - 16,431,242 (+)NCBIHuRef
CHM1_1817,981,819 - 18,088,914 (+)NCBICHM1_1
T2T-CHM13v2.0818,190,478 - 18,297,432 (+)NCBIT2T-CHM13v2.0
Pcm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,692,521 - 41,787,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,692,789 - 41,785,381 (+)EnsemblGRCm39 Ensembl
GRCm38841,239,484 - 41,334,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl841,239,752 - 41,332,344 (+)EnsemblGRCm38mm10GRCm38
MGSCv37842,325,113 - 42,419,441 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36842,738,590 - 42,831,161 (+)NCBIMGSCv36mm8
Celera843,861,512 - 43,957,470 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Pcm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555521,675,477 - 1,768,900 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555521,675,477 - 1,768,902 (-)NCBIChiLan1.0ChiLan1.0
PCM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1812,122,250 - 12,227,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0817,140,458 - 17,246,165 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1814,093,976 - 14,199,691 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl814,093,988 - 14,199,691 (+)Ensemblpanpan1.1panPan2
PCM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11641,212,733 - 41,291,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1641,214,417 - 41,291,376 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1641,721,642 - 41,801,790 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01643,271,145 - 43,350,189 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1643,271,038 - 43,351,397 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11641,363,789 - 41,443,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,909,221 - 41,989,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01642,102,469 - 42,182,628 (+)NCBIUU_Cfam_GSD_1.0
Pcm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494338,024,110 - 38,115,540 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365547,938 - 87,756 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365547,906 - 86,187 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,597,132 - 5,690,264 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,596,926 - 5,705,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2176,261,081 - 6,295,165 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1816,018,414 - 16,124,846 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl816,017,972 - 16,125,145 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605226,150,895 - 26,257,332 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476921,153,243 - 21,262,327 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcm1
143 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:36
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000014202
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat

Markers in Region
RH133624  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21651,036,262 - 51,036,448 (+)MAPPERmRatBN7.2
Rnor_6.01654,068,671 - 54,068,856NCBIRnor6.0
Rnor_5.01653,782,465 - 53,782,650UniSTSRnor5.0
RGSC_v3.41654,349,556 - 54,349,741UniSTSRGSC3.4
Celera1648,931,710 - 48,931,895UniSTS
RH 3.4 Map16523.1UniSTS
Cytogenetic Map16q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 48 32 19 32 8 10 74 34 41 11 8
Low 2 9 9 9 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014202   ⟹   ENSRNOP00000014202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)Ensembl
Rnor_6.0 Ensembl1654,040,721 - 54,137,485 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085435   ⟹   ENSRNOP00000071613
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)Ensembl
Rnor_6.0 Ensembl1654,040,847 - 54,137,660 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104140   ⟹   ENSRNOP00000078093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106424   ⟹   ENSRNOP00000082952
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,009,490 - 51,105,091 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109286   ⟹   ENSRNOP00000089217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,008,315 - 51,105,091 (-)Ensembl
RefSeq Acc Id: NM_031076   ⟹   NP_112338
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,315 - 51,105,091 (-)NCBI
Rnor_6.01654,040,721 - 54,137,485 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
RGSC_v3.41654,321,572 - 54,419,178 (-)RGD
Celera1648,903,540 - 49,000,197 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253183   ⟹   XP_006253245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,315 - 51,105,260 (-)NCBI
Rnor_6.01654,040,721 - 54,137,674 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253184   ⟹   XP_006253246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,260 (-)NCBI
Rnor_6.01654,040,721 - 54,137,675 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253185   ⟹   XP_006253247
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,315 - 51,105,261 (-)NCBI
Rnor_6.01654,040,721 - 54,137,675 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253186   ⟹   XP_006253248
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,315 - 51,105,259 (-)NCBI
Rnor_6.01654,040,721 - 54,137,674 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253187   ⟹   XP_006253249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,260 (-)NCBI
Rnor_6.01654,040,721 - 54,137,674 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253188   ⟹   XP_006253250
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,259 (-)NCBI
Rnor_6.01654,040,721 - 54,137,674 (-)NCBI
Rnor_5.01653,754,432 - 53,851,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771284   ⟹   XP_008769506
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,260 (-)NCBI
Rnor_6.01654,040,721 - 54,137,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771285   ⟹   XP_008769507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,103,956 (-)NCBI
Rnor_6.01654,040,721 - 54,136,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600257   ⟹   XP_017455746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,315 - 51,105,258 (-)NCBI
Rnor_6.01654,040,721 - 54,137,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094854   ⟹   XP_038950782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,260 (-)NCBI
RefSeq Acc Id: XM_039094856   ⟹   XP_038950784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,008,640 - 51,105,259 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_112338   ⟸   NM_031076
- UniProtKB: G3V7E6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253247   ⟸   XM_006253185
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006253250   ⟸   XM_006253188
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A6S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253249   ⟸   XM_006253187
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006253248   ⟸   XM_006253186
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K0X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253245   ⟸   XM_006253183
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253246   ⟸   XM_006253184
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769506   ⟸   XM_008771284
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769507   ⟸   XM_008771285
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455746   ⟸   XM_017600257
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000071613   ⟸   ENSRNOT00000085435
RefSeq Acc Id: ENSRNOP00000014202   ⟸   ENSRNOT00000014202
RefSeq Acc Id: XP_038950782   ⟸   XM_039094854
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950784   ⟸   XM_039094856
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000082952   ⟸   ENSRNOT00000106424
RefSeq Acc Id: ENSRNOP00000078093   ⟸   ENSRNOT00000104140
RefSeq Acc Id: ENSRNOP00000089217   ⟸   ENSRNOT00000109286
Protein Domains
Pericentriolar material 1 protein C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0X1-F1-model_v2 AlphaFold A0A0G2K0X1 1-2128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700115
Promoter ID:EPDNEW_R10639
Type:multiple initiation site
Name:Pcm1_2
Description:pericentriolar material 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10640  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01654,137,486 - 54,137,546EPDNEW
RGD ID:13700126
Promoter ID:EPDNEW_R10640
Type:initiation region
Name:Pcm1_1
Description:pericentriolar material 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10639  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01654,137,639 - 54,137,699EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620901 AgrOrtholog
BioCyc Gene G2FUF-11259 BioCyc
Ensembl Genes ENSRNOG00000010155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014202 ENTREZGENE
  ENSRNOP00000014202.4 UniProtKB/TrEMBL
  ENSRNOP00000071613 ENTREZGENE
  ENSRNOP00000071613.2 UniProtKB/TrEMBL
  ENSRNOP00000078093 ENTREZGENE
  ENSRNOP00000078093.1 UniProtKB/TrEMBL
  ENSRNOP00000082952 ENTREZGENE
  ENSRNOP00000082952.1 UniProtKB/TrEMBL
  ENSRNOP00000089217 ENTREZGENE
  ENSRNOP00000089217.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014202 ENTREZGENE
  ENSRNOT00000014202.7 UniProtKB/TrEMBL
  ENSRNOT00000085435 ENTREZGENE
  ENSRNOT00000085435.2 UniProtKB/TrEMBL
  ENSRNOT00000104140 ENTREZGENE
  ENSRNOT00000104140.1 UniProtKB/TrEMBL
  ENSRNOT00000106424 ENTREZGENE
  ENSRNOT00000106424.1 UniProtKB/TrEMBL
  ENSRNOT00000109286 ENTREZGENE
  ENSRNOT00000109286.1 UniProtKB/TrEMBL
InterPro PCM1_C UniProtKB/TrEMBL
  Pericentriolar_Pcm1 UniProtKB/TrEMBL
KEGG Report rno:81740 UniProtKB/TrEMBL
NCBI Gene 81740 ENTREZGENE
PANTHER PERICENTRIOLAR MATERIAL 1 PROTEIN UniProtKB/TrEMBL
  PTHR14164 UniProtKB/TrEMBL
Pfam PCM1_C UniProtKB/TrEMBL
PhenoGen Pcm1 PhenoGen
UniProt A0A0G2K0X1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y9X1_RAT UniProtKB/TrEMBL
  A0A8I5ZUW5_RAT UniProtKB/TrEMBL
  A0A8I6A6S1 ENTREZGENE, UniProtKB/TrEMBL
  G3V7E6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Pcm1  pericentriolar material 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Pcm1  pericentriolar material 1      Symbol and Name status set to provisional 70820 PROVISIONAL