Rdh11 (retinol dehydrogenase 11) - Rat Genome Database

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Gene: Rdh11 (retinol dehydrogenase 11) Rattus norvegicus
Analyze
Symbol: Rdh11
Name: retinol dehydrogenase 11
RGD ID: 1312001
Description: Predicted to enable NADP-retinol dehydrogenase activity and aldehyde dehydrogenase (NADP+) activity. Predicted to be involved in cellular detoxification of aldehyde; retinol metabolic process; and visual perception. Predicted to act upstream of or within adaptation of rhodopsin mediated signaling and retinal metabolic process. Predicted to be located in endoplasmic reticulum membrane and photoreceptor inner segment. Orthologous to human RDH11 (retinol dehydrogenase 11); PARTICIPATES IN retinoid cycle metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362757; retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2697,979,377 - 97,995,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,979,378 - 97,995,252 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,408,844 - 98,424,717 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0698,707,987 - 98,723,860 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0698,094,123 - 98,109,999 (-)NCBIRnor_WKY
Rnor_6.06102,356,498 - 102,372,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,356,492 - 102,372,611 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,043,172 - 115,059,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,946,431 - 101,962,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16101,949,887 - 101,966,062 (-)NCBI
Celera696,364,396 - 96,380,270 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinol  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buspirone  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
haloperidol  (ISO)
Heptachlor epoxide  (ISO)
hydrazine  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
pravastatin  (EXP,ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
Triptolide  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Key enzymes of the retinoid (visual) cycle in vertebrate retina. Kiser PD, etal., Biochim Biophys Acta. 2012 Jan;1821(1):137-51. Epub 2011 Apr 5.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12226107   PMID:12477932   PMID:12807874   PMID:15790565   PMID:21873635   PMID:29567832  


Genomics

Comparative Map Data
Rdh11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2697,979,377 - 97,995,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,979,378 - 97,995,252 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,408,844 - 98,424,717 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0698,707,987 - 98,723,860 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0698,094,123 - 98,109,999 (-)NCBIRnor_WKY
Rnor_6.06102,356,498 - 102,372,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,356,492 - 102,372,611 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,043,172 - 115,059,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,946,431 - 101,962,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16101,949,887 - 101,966,062 (-)NCBI
Celera696,364,396 - 96,380,270 (-)NCBICelera
Cytogenetic Map6q24NCBI
RDH11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,676,800 - 67,695,764 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1467,676,800 - 67,695,793 (-)EnsemblGRCh38hg38GRCh38
GRCh371468,143,517 - 68,162,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,213,270 - 67,232,213 (-)NCBINCBI36Build 36hg18NCBI36
Build 341467,213,270 - 67,232,213NCBI
Celera1448,202,560 - 48,221,552 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,313,196 - 48,332,190 (-)NCBIHuRef
CHM1_11468,082,296 - 68,101,280 (-)NCBICHM1_1
T2T-CHM13v2.01461,883,919 - 61,902,884 (-)NCBIT2T-CHM13v2.0
Rdh11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,221,007 - 79,238,629 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,221,111 - 79,239,067 (-)EnsemblGRCm39 Ensembl
GRCm381279,174,233 - 79,191,855 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1279,174,337 - 79,192,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv371280,276,538 - 80,292,806 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361280,093,177 - 80,111,133 (-)NCBIMGSCv36mm8
Celera1280,639,993 - 80,656,287 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Rdh11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,508,338 - 2,520,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,506,641 - 2,521,506 (+)NCBIChiLan1.0ChiLan1.0
RDH11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11467,135,366 - 67,154,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1467,135,366 - 67,154,286 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01448,256,951 - 48,275,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RDH11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,651,970 - 41,669,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,614,921 - 41,669,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,343,458 - 41,360,794 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0841,881,101 - 41,898,645 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,880,751 - 41,898,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,497,981 - 41,515,586 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,571,395 - 41,588,996 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,930,720 - 41,948,404 (-)NCBIUU_Cfam_GSD_1.0
Rdh11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,109,203 - 63,126,479 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649511,066,660 - 11,082,044 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493649511,065,946 - 11,082,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RDH11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,415,042 - 91,452,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,415,041 - 91,452,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,722,352 - 97,759,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RDH11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,911,830 - 44,932,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,909,001 - 44,932,611 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605333,141,721 - 33,161,946 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rdh11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,283,497 - 33,295,091 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,283,336 - 33,295,797 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rdh11
60 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:87
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000015844, ENSRNOT00000042306
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat

Markers in Region
BF407444  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2697,985,040 - 97,985,157 (+)MAPPERmRatBN7.2
Rnor_6.06102,362,149 - 102,362,265NCBIRnor6.0
Rnor_5.06115,048,823 - 115,048,939UniSTSRnor5.0
RGSC_v3.46101,952,395 - 101,952,511UniSTSRGSC3.4
Celera696,370,060 - 96,370,176UniSTS
RH 3.4 Map6691.8UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 57 41 19 41 74 35 41 11
Low 15 8 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000078436   ⟹   ENSRNOP00000069383
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl697,979,746 - 97,995,019 (-)Ensembl
Rnor_6.0 Ensembl6102,356,867 - 102,372,385 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085927   ⟹   ENSRNOP00000070625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl697,979,378 - 97,995,252 (-)Ensembl
Rnor_6.0 Ensembl6102,356,492 - 102,372,611 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105155   ⟹   ENSRNOP00000079983
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl697,979,378 - 97,994,182 (-)Ensembl
RefSeq Acc Id: NM_001012193   ⟹   NP_001012193
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2697,979,377 - 97,995,252 (-)NCBI
Rnor_6.06102,356,498 - 102,372,618 (-)NCBI
Rnor_5.06115,043,172 - 115,059,292 (-)NCBI
RGSC_v3.46101,946,431 - 101,962,606 (-)RGD
Celera696,364,396 - 96,380,270 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001012193 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79276 (Get FASTA)   NCBI Sequence Viewer  
  AAQ91067 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001012193   ⟸   NM_001012193
- Peptide Label: precursor
- UniProtKB: Q6AXX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069383   ⟸   ENSRNOT00000078436
RefSeq Acc Id: ENSRNOP00000070625   ⟸   ENSRNOT00000085927
RefSeq Acc Id: ENSRNOP00000079983   ⟸   ENSRNOT00000105155

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6TUD3-F1-model_v2 AlphaFold Q6TUD3 1-407 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694692
Promoter ID:EPDNEW_R5217
Type:initiation region
Name:Rdh11_1
Description:retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06102,372,591 - 102,372,651EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312001 AgrOrtholog
BioCyc Gene G2FUF-36971 BioCyc
BioCyc Pathway PWY-6857 [retinol biosynthesis] BioCyc
  PWY-6861 [the visual cycle I (vertebrates)] BioCyc
Ensembl Genes ENSRNOG00000054770 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000069383.1 UniProtKB/TrEMBL
  ENSRNOP00000070625 ENTREZGENE
  ENSRNOP00000070625.1 UniProtKB/TrEMBL
  ENSRNOP00000079983.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078436.2 UniProtKB/TrEMBL
  ENSRNOT00000085927 ENTREZGENE
  ENSRNOT00000085927.2 UniProtKB/TrEMBL
  ENSRNOT00000105155.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134077 IMAGE-MGC_LOAD
InterPro Glc/ribitol_DH UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report rno:362757 UniProtKB/TrEMBL
MGC_CLONE MGC:94397 IMAGE-MGC_LOAD
NCBI Gene 362757 ENTREZGENE
Pfam adh_short UniProtKB/TrEMBL
PhenoGen Rdh11 PhenoGen
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6G5Z7_RAT UniProtKB/TrEMBL
  Q6AXX5 ENTREZGENE, UniProtKB/TrEMBL
  Q6TUD3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-19 Rdh11  retinol dehydrogenase 11  Rdh11  retinol dehydrogenase 11 (all-trans/9-cis/11-cis)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Rdh11  retinol dehydrogenase 11 (all-trans/9-cis/11-cis)  Rdh11  retinol dehydrogenase 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rdh11  retinol dehydrogenase 11  Rdh11_predicted  retinol dehydrogenase 11 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rdh11_predicted  retinol dehydrogenase 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED