Sdccag8 (SHH signaling and ciliogenesis regulator SDCCAG8) - Rat Genome Database

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Gene: Sdccag8 (SHH signaling and ciliogenesis regulator SDCCAG8) Rattus norvegicus
Analyze
Symbol: Sdccag8
Name: SHH signaling and ciliogenesis regulator SDCCAG8
RGD ID: 727781
Description: Predicted to be involved in several processes, including microtubule organizing center organization; neuron migration; and regulation of cilium assembly. Predicted to be located in several cellular components, including cell-cell junction; microtubule organizing center; and photoreceptor cell cilium. Predicted to be active in centriole and centrosome. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 16 and Senior-Loken syndrome. Orthologous to human SDCCAG8 (SHH signaling and ciliogenesis regulator SDCCAG8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305002; MGC93052; serologically defined colon cancer antigen 8; serologically defined colon cancer antigen 8 homolog; slinky
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,286,787 - 91,518,255 (+)NCBIGRCr8
mRatBN7.21388,754,521 - 88,979,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,754,626 - 89,097,111 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,259,903 - 91,449,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01392,660,135 - 92,849,537 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01389,847,471 - 90,036,885 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01394,888,046 - 95,100,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,888,078 - 95,112,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01399,341,101 - 99,552,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41392,612,281 - 92,802,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11392,801,164 - 92,991,534 (+)NCBI
Celera1388,335,057 - 88,523,670 (+)NCBICelera
Cytogenetic Map13q24-q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification and characterization of the novel centrosome-associated protein CCCAP. Kenedy AA, etal., Gene 2003 Jan 16;303:35-46.
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20622438   PMID:20835237   PMID:21399614   PMID:25088364   PMID:27224062   PMID:29899041  


Genomics

Comparative Map Data
Sdccag8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,286,787 - 91,518,255 (+)NCBIGRCr8
mRatBN7.21388,754,521 - 88,979,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,754,626 - 89,097,111 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,259,903 - 91,449,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01392,660,135 - 92,849,537 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01389,847,471 - 90,036,885 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01394,888,046 - 95,100,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,888,078 - 95,112,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01399,341,101 - 99,552,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41392,612,281 - 92,802,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11392,801,164 - 92,991,534 (+)NCBI
Celera1388,335,057 - 88,523,670 (+)NCBICelera
Cytogenetic Map13q24-q25NCBI
SDCCAG8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,256,041 - 243,500,091 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,256,034 - 243,500,091 (+)EnsemblGRCh38hg38GRCh38
GRCh371243,419,343 - 243,663,393 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,485,943 - 241,730,016 (+)NCBINCBI36Build 36hg18NCBI36
Build 341239,745,516 - 239,989,128NCBI
Celera1216,706,118 - 216,951,200 (+)NCBICelera
Cytogenetic Map1q43-q44NCBI
HuRef1213,799,209 - 214,043,437 (+)NCBIHuRef
CHM1_11244,692,001 - 244,936,037 (+)NCBICHM1_1
T2T-CHM13v2.01242,667,066 - 242,911,895 (+)NCBIT2T-CHM13v2.0
Sdccag8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,642,226 - 176,848,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,642,226 - 176,848,003 (+)EnsemblGRCm39 Ensembl
GRCm381176,814,660 - 177,020,438 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,814,660 - 177,020,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,744,943 - 178,950,563 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,651,335 - 178,857,110 (+)NCBIMGSCv36mm8
Celera1183,882,813 - 184,082,148 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.66NCBI
Sdccag8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554066,695,051 - 6,909,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554066,694,687 - 6,909,555 (+)NCBIChiLan1.0ChiLan1.0
SDCCAG8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,628,659 - 5,891,631 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan115,846,099 - 6,112,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01218,856,571 - 219,107,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,238,840 - 224,481,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,239,009 - 224,481,132 (+)Ensemblpanpan1.1panPan2
SDCCAG8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,395,977 - 34,631,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl734,396,345 - 34,631,462 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha733,871,132 - 34,106,715 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0734,222,473 - 34,458,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,223,281 - 34,458,680 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,059,126 - 34,295,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0734,076,229 - 34,312,381 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0734,340,965 - 34,577,170 (+)NCBIUU_Cfam_GSD_1.0
Sdccag8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934447,315,747 - 47,545,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365267,202,150 - 7,430,874 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365267,202,147 - 7,431,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDCCAG8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,191,156 - 16,441,815 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11016,191,178 - 16,441,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21018,268,467 - 18,473,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDCCAG8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12580,263,691 - 80,510,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2580,264,274 - 80,509,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605582,444,277 - 82,704,082 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdccag8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477115,896,661 - 16,115,375 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477115,898,172 - 16,116,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sdccag8
916 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:143
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000005647
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat

Markers in Region
RH133674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,943,493 - 88,943,684 (+)MAPPERmRatBN7.2
Rnor_6.01395,076,007 - 95,076,197NCBIRnor6.0
Rnor_5.01399,527,652 - 99,527,842UniSTSRnor5.0
RGSC_v3.41392,802,089 - 92,802,279UniSTSRGSC3.4
Celera1388,523,109 - 88,523,299UniSTS
RH 3.4 Map13592.5UniSTS
Cytogenetic Map13q25UniSTS
Cytogenetic Map13q24-q26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 45 3 45 3 108 15 84 33
Low 21 141 182 144 24 144 36 45 142 100 61 24
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_177929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF352814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005647   ⟹   ENSRNOP00000005647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,649 - 88,944,055 (+)Ensembl
Rnor_6.0 Ensembl1394,888,174 - 95,076,568 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077345   ⟹   ENSRNOP00000070918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 89,097,111 (+)Ensembl
Rnor_6.0 Ensembl1394,888,277 - 95,013,016 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077995   ⟹   ENSRNOP00000069051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,949,632 (+)Ensembl
Rnor_6.0 Ensembl1394,888,078 - 95,112,033 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097671   ⟹   ENSRNOP00000088259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,949,818 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100772   ⟹   ENSRNOP00000087121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,979,569 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101206   ⟹   ENSRNOP00000084741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,764,640 - 88,936,402 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101789   ⟹   ENSRNOP00000085343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,944,061 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106321   ⟹   ENSRNOP00000085252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,881,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114495   ⟹   ENSRNOP00000084784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,754,626 - 88,967,673 (+)Ensembl
RefSeq Acc Id: NM_177929   ⟹   NP_808790
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,787 - 91,476,186 (+)NCBI
mRatBN7.21388,754,649 - 88,944,055 (+)NCBI
Rnor_6.01394,888,174 - 95,076,568 (+)NCBI
Rnor_5.01399,341,101 - 99,552,432 (+)NCBI
RGSC_v3.41392,612,281 - 92,802,650 (+)RGD
Celera1388,335,057 - 88,523,670 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250321   ⟹   XP_006250383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,502,031 (+)NCBI
mRatBN7.21388,754,521 - 88,969,415 (+)NCBI
Rnor_6.01394,888,046 - 95,100,833 (+)NCBI
Rnor_5.01399,341,101 - 99,552,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250322   ⟹   XP_006250384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,482,049 (+)NCBI
mRatBN7.21388,754,521 - 88,956,758 (+)NCBI
Rnor_6.01394,888,046 - 95,082,416 (+)NCBI
Rnor_5.01399,341,101 - 99,552,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769789   ⟹   XP_008768011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
mRatBN7.21388,754,521 - 88,894,604 (+)NCBI
Rnor_6.01394,888,046 - 95,029,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090807   ⟹   XP_038946735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,518,255 (+)NCBI
mRatBN7.21388,754,521 - 88,979,363 (+)NCBI
RefSeq Acc Id: XM_039090808   ⟹   XP_038946736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,420,804 (+)NCBI
mRatBN7.21388,754,521 - 88,881,094 (+)NCBI
RefSeq Acc Id: XM_039090810   ⟹   XP_038946738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,502,037 (+)NCBI
mRatBN7.21388,754,521 - 88,969,418 (+)NCBI
RefSeq Acc Id: XM_039090811   ⟹   XP_038946739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,293,979 - 91,475,946 (+)NCBI
mRatBN7.21388,761,843 - 88,979,363 (+)NCBI
RefSeq Acc Id: XM_039090812   ⟹   XP_038946740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,475,946 (+)NCBI
mRatBN7.21388,754,535 - 88,979,363 (+)NCBI
RefSeq Acc Id: XM_039090814   ⟹   XP_038946742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,403,000 (+)NCBI
mRatBN7.21388,754,521 - 88,851,549 (+)NCBI
RefSeq Acc Id: XM_063272377   ⟹   XP_063128447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,475,946 (+)NCBI
RefSeq Acc Id: XM_063272378   ⟹   XP_063128448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,518,255 (+)NCBI
RefSeq Acc Id: XM_063272379   ⟹   XP_063128449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,475,946 (+)NCBI
RefSeq Acc Id: XM_063272380   ⟹   XP_063128450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,476,192 (+)NCBI
RefSeq Acc Id: XM_063272381   ⟹   XP_063128451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,482,049 (+)NCBI
RefSeq Acc Id: XM_063272382   ⟹   XP_063128452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,293,981 - 91,475,946 (+)NCBI
RefSeq Acc Id: XM_063272383   ⟹   XP_063128453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,475,946 (+)NCBI
RefSeq Acc Id: XM_063272384   ⟹   XP_063128454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,293,979 - 91,482,049 (+)NCBI
RefSeq Acc Id: XM_063272385   ⟹   XP_063128455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,307,159 - 91,475,946 (+)NCBI
RefSeq Acc Id: XR_005492248
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
mRatBN7.21388,754,521 - 88,896,752 (+)NCBI
RefSeq Acc Id: XR_005492249
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
mRatBN7.21388,754,521 - 88,896,752 (+)NCBI
RefSeq Acc Id: XR_005492250
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
mRatBN7.21388,754,521 - 88,896,752 (+)NCBI
RefSeq Acc Id: XR_010056919
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
RefSeq Acc Id: XR_010056920
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,286,820 - 91,463,081 (+)NCBI
Protein Sequences
Protein RefSeqs NP_808790 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250383 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250384 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768011 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946735 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946738 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946742 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128447 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128448 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128450 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128452 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128454 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128455 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86973 (Get FASTA)   NCBI Sequence Viewer  
  AAO39847 (Get FASTA)   NCBI Sequence Viewer  
  EDL94782 (Get FASTA)   NCBI Sequence Viewer  
  EDL94783 (Get FASTA)   NCBI Sequence Viewer  
  EDL94784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005647.5
  ENSRNOP00000069051.2
  ENSRNOP00000070918.2
  ENSRNOP00000084741.1
  ENSRNOP00000084784.1
  ENSRNOP00000085252.1
  ENSRNOP00000085343.1
  ENSRNOP00000087121.1
  ENSRNOP00000088259.1
RefSeq Acc Id: NP_808790   ⟸   NM_177929
- UniProtKB: Q5PQY1 (UniProtKB/TrEMBL),   F6SRB4 (UniProtKB/TrEMBL),   Q812C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250383   ⟸   XM_006250321
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZYP1 (UniProtKB/TrEMBL),   A0A0G2JZ58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250384   ⟸   XM_006250322
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JUD0 (UniProtKB/TrEMBL),   A0A0G2JZ58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768011   ⟸   XM_008769789
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A2X0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070918   ⟸   ENSRNOT00000077345
Ensembl Acc Id: ENSRNOP00000069051   ⟸   ENSRNOT00000077995
Ensembl Acc Id: ENSRNOP00000005647   ⟸   ENSRNOT00000005647
RefSeq Acc Id: XP_038946735   ⟸   XM_039090807
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6Q1 (UniProtKB/TrEMBL),   A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946738   ⟸   XM_039090810
- Peptide Label: isoform X10
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946736   ⟸   XM_039090808
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A2X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946742   ⟸   XM_039090814
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A2X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946740   ⟸   XM_039090812
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946739   ⟸   XM_039090811
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087121   ⟸   ENSRNOT00000100772
Ensembl Acc Id: ENSRNOP00000088259   ⟸   ENSRNOT00000097671
Ensembl Acc Id: ENSRNOP00000085343   ⟸   ENSRNOT00000101789
Ensembl Acc Id: ENSRNOP00000084784   ⟸   ENSRNOT00000114495
Ensembl Acc Id: ENSRNOP00000085252   ⟸   ENSRNOT00000106321
Ensembl Acc Id: ENSRNOP00000084741   ⟸   ENSRNOT00000101206
RefSeq Acc Id: XP_063128448   ⟸   XM_063272378
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A2X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128451   ⟸   XM_063272381
- Peptide Label: isoform X11
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128450   ⟸   XM_063272380
- Peptide Label: isoform X9
- UniProtKB: Q812C8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128447   ⟸   XM_063272377
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128449   ⟸   XM_063272379
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128453   ⟸   XM_063272383
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128454   ⟸   XM_063272384
- Peptide Label: isoform X13
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128452   ⟸   XM_063272382
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JZ58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128455   ⟸   XM_063272385
- Peptide Label: isoform X15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUD0-F1-model_v2 AlphaFold A0A0G2JUD0 1-722 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699048
Promoter ID:EPDNEW_R9568
Type:initiation region
Name:Sdccag8_1
Description:serologically defined colon cancer antigen 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01394,888,153 - 94,888,213EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727781 AgrOrtholog
BioCyc Gene G2FUF-17207 BioCyc
Ensembl Genes ENSRNOG00000004181 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005647.7 UniProtKB/TrEMBL
  ENSRNOT00000077345.2 UniProtKB/TrEMBL
  ENSRNOT00000077995.2 UniProtKB/TrEMBL
  ENSRNOT00000097671.1 UniProtKB/TrEMBL
  ENSRNOT00000100772.1 UniProtKB/TrEMBL
  ENSRNOT00000101206.1 UniProtKB/TrEMBL
  ENSRNOT00000101789.1 UniProtKB/TrEMBL
  ENSRNOT00000106321.1 UniProtKB/TrEMBL
  ENSRNOT00000114495.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191324 IMAGE-MGC_LOAD
InterPro SDCCAG8 UniProtKB/TrEMBL
KEGG Report rno:305002 UniProtKB/TrEMBL
MGC_CLONE MGC:93052 IMAGE-MGC_LOAD
NCBI Gene 305002 ENTREZGENE
PANTHER PTHR34343 UniProtKB/TrEMBL
  SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8 UniProtKB/TrEMBL
Pfam CCCAP UniProtKB/TrEMBL
PhenoGen Sdccag8 PhenoGen
RatGTEx ENSRNOG00000004181 RatGTEx
UniProt A0A0G2JUD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JZ58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1F7_RAT UniProtKB/TrEMBL
  A0A8I6A1X1_RAT UniProtKB/TrEMBL
  A0A8I6A2X0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A654_RAT UniProtKB/TrEMBL
  A0A8I6A6Q1 ENTREZGENE, UniProtKB/TrEMBL
  A6JGC7_RAT UniProtKB/TrEMBL
  A6JGC8_RAT UniProtKB/TrEMBL
  F6SRB4 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQY1 ENTREZGENE, UniProtKB/TrEMBL
  Q812C8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Sdccag8  SHH signaling and ciliogenesis regulator SDCCAG8  Sdccag8  serologically defined colon cancer antigen 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Sdccag8  serologically defined colon cancer antigen 8    slinky  Name updated 1299863 APPROVED
2004-09-10 Sdccag8  slinky  LOC305002    Symbol and Name updated 1299863 APPROVED