Sdccag8 (SHH signaling and ciliogenesis regulator SDCCAG8) - Rat Genome Database

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Gene: Sdccag8 (SHH signaling and ciliogenesis regulator SDCCAG8) Chinchilla lanigera
Analyze
Symbol: Sdccag8
Name: SHH signaling and ciliogenesis regulator SDCCAG8 (Ensembl:serologically defined colon cancer antigen 8)
RGD ID: 8952591
Description: INVOLVED IN establishment of cell polarity (ortholog); microtubule organizing center organization (ortholog); neuron migration (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 16 (ortholog); cystic kidney disease (ortholog); FOUND IN cell-cell junction (ortholog); centriolar satellite (ortholog); centriole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serologically defined colon cancer antigen 8; serologically defined colon cancer antigen 8 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554066,695,051 - 6,909,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554066,694,687 - 6,909,555 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sdccag8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554066,695,051 - 6,909,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554066,694,687 - 6,909,555 (+)NCBIChiLan1.0ChiLan1.0
SDCCAG8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,256,041 - 243,500,091 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,256,034 - 243,500,091 (+)EnsemblGRCh38hg38GRCh38
GRCh371243,419,343 - 243,663,393 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,485,943 - 241,730,016 (+)NCBINCBI36Build 36hg18NCBI36
Build 341239,745,516 - 239,989,128NCBI
Celera1216,706,118 - 216,951,200 (+)NCBICelera
Cytogenetic Map1q43-q44NCBI
HuRef1213,799,209 - 214,043,437 (+)NCBIHuRef
CHM1_11244,692,001 - 244,936,037 (+)NCBICHM1_1
T2T-CHM13v2.01242,667,066 - 242,911,895 (+)NCBIT2T-CHM13v2.0
Sdccag8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,642,226 - 176,848,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,642,226 - 176,848,003 (+)EnsemblGRCm39 Ensembl
GRCm381176,814,660 - 177,020,438 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,814,660 - 177,020,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,744,943 - 178,950,563 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,651,335 - 178,857,110 (+)NCBIMGSCv36mm8
Celera1183,882,813 - 184,082,148 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.66NCBI
Sdccag8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,286,787 - 91,518,255 (+)NCBIGRCr8
mRatBN7.21388,754,521 - 88,979,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,754,626 - 89,097,111 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,259,903 - 91,449,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01392,660,135 - 92,849,537 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01389,847,471 - 90,036,885 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01394,888,046 - 95,100,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,888,078 - 95,112,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01399,341,101 - 99,552,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41392,612,281 - 92,802,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11392,801,164 - 92,991,534 (+)NCBI
Celera1388,335,057 - 88,523,670 (+)NCBICelera
Cytogenetic Map13q24-q25NCBI
SDCCAG8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,628,659 - 5,891,631 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan115,846,099 - 6,112,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01218,856,571 - 219,107,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,238,840 - 224,481,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,239,009 - 224,481,132 (+)Ensemblpanpan1.1panPan2
SDCCAG8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,395,977 - 34,631,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl734,396,345 - 34,631,462 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha733,871,132 - 34,106,715 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0734,222,473 - 34,458,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,223,281 - 34,458,680 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,059,126 - 34,295,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0734,076,229 - 34,312,381 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0734,340,965 - 34,577,170 (+)NCBIUU_Cfam_GSD_1.0
Sdccag8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934447,315,747 - 47,545,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365267,202,150 - 7,430,874 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365267,202,147 - 7,431,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDCCAG8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,191,156 - 16,441,815 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11016,191,178 - 16,441,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21018,268,467 - 18,473,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDCCAG8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12580,263,691 - 80,510,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2580,264,274 - 80,509,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605582,444,277 - 82,704,082 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdccag8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477115,896,661 - 16,115,375 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477115,898,172 - 16,116,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005374761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005374762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013520320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01005756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01119111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000017181   ⟹   ENSCLAP00000017014
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554066,695,051 - 6,909,555 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017182   ⟹   ENSCLAP00000017015
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554066,695,506 - 6,736,897 (+)Ensembl
RefSeq Acc Id: XM_005374761   ⟹   XP_005374818
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,909,555 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374762   ⟹   XP_005374819
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,695,354 - 6,909,555 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520309   ⟹   XP_013375763
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,852,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520314   ⟹   XP_013375768
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,886,746 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520316   ⟹   XP_013375770
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,855,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520317   ⟹   XP_013375771
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,885,387 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520318   ⟹   XP_013375772
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,838,339 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520320   ⟹   XP_013375774
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554066,694,687 - 6,810,785 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005374818   ⟸   XM_005374761
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005374819   ⟸   XM_005374762
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VSF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375768   ⟸   XM_013520314
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013375771   ⟸   XM_013520317
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013375770   ⟸   XM_013520316
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013375763   ⟸   XM_013520309
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013375772   ⟸   XM_013520318
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013375774   ⟸   XM_013520320
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSCLAP00000017014   ⟸   ENSCLAT00000017181
RefSeq Acc Id: ENSCLAP00000017015   ⟸   ENSCLAT00000017182


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011676 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017181 ENTREZGENE
  ENSCLAT00000017181.1 UniProtKB/TrEMBL
  ENSCLAT00000017182.1 UniProtKB/TrEMBL
InterPro SDCCAG8 UniProtKB/TrEMBL
NCBI Gene Sdccag8 ENTREZGENE
PANTHER PTHR34343 UniProtKB/TrEMBL
  SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8 UniProtKB/TrEMBL
Pfam CCCAP UniProtKB/TrEMBL
UniProt A0A8C2VMV7_CHILA UniProtKB/TrEMBL
  A0A8C2VSF0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-28 Sdccag8  SHH signaling and ciliogenesis regulator SDCCAG8  Sdccag8  serologically defined colon cancer antigen 8  Symbol and/or name change 5135510 APPROVED