Rsph9 (radial spoke head component 9)

Advanced Search (OLGA)

Gene: Rsph9 (radial spoke head component 9) Rattus norvegicus

Analyze

Symbol:

Rsph9

Name:

radial spoke head component 9

RGD ID:

1310693

Description:

Predicted to be involved in cilium assembly and cilium movement involved in cell motility. Predicted to be located in sperm flagellum. Predicted to be part of radial spoke head 1 and radial spoke head 3. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC316238; radial spoke head 9 homolog; radial spoke head 9 homolog (Chlamydomonas); radial spoke head protein 9 homolog; RGD1310693; similar to RIKEN cDNA 1700027N10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RSPH9 (radial spoke head component 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rsph9 (radial spoke head 9 homolog (Chlamydomonas))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rsph9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RSPH9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RSPH9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rsph9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RSPH9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RSPH9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rsph9 (radial spoke head component 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RSPH9 (radial spoke head component 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rsph9 (radial spoke head 9 homolog (Chlamydomonas))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rsph9 (radial spoke head 9 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31803	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rsph9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,337,681 - 22,350,515 (+)	NCBI		GRCr8
mRatBN7.2	9	14,840,115 - 14,852,950 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,840,115 - 14,860,062 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,424,687 - 23,437,370 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,487,093 - 28,499,790 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,788,115 - 26,800,800 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,224,589 - 17,245,093 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,225,122 - 17,245,093 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,120,436 - 16,140,296 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	10,405,162 - 10,425,818 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	10,402,513 - 10,416,012 (+)	NCBI
Celera	9	12,587,282 - 12,607,082 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

infantile Refsum disease (ISO)

primary ciliary dyskinesia (ISO)

primary ciliary dyskinesia 12 (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chloroprene (ISO)

cisplatin (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

flutamide (EXP)

lead(0) (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

propiconazole (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

tetrachloroethene (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

trichloroethene (EXP,ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonemal central apparatus assembly (ISO)

axoneme assembly (IBA,ISO)

cilium movement (ISO)

cilium movement involved in cell motility (IBA)

motile cilium assembly (IBA)

radial spoke assembly (ISO)

Cellular Component

9+2 motile cilium (ISO)

axoneme (IBA,ISO)

kinocilium (IEA)

motile cilium (ISO)

radial spoke (ISO)

radial spoke head (ISO)

radial spoke head 1 (ISO)

radial spoke head 3 (ISO)

sperm flagellum (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19200523	PMID:26909801

Genomics

Comparative Map Data

Rsph9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,337,681 - 22,350,515 (+)	NCBI		GRCr8
mRatBN7.2	9	14,840,115 - 14,852,950 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,840,115 - 14,860,062 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,424,687 - 23,437,370 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,487,093 - 28,499,790 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,788,115 - 26,800,800 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,224,589 - 17,245,093 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,225,122 - 17,245,093 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,120,436 - 16,140,296 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	10,405,162 - 10,425,818 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	10,402,513 - 10,416,012 (+)	NCBI
Celera	9	12,587,282 - 12,607,082 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

RSPH9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,645,036 - 43,672,600 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,645,036 - 43,672,600 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,612,773 - 43,640,337 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,720,788 - 43,746,722 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	43,720,787 - 43,746,722	NCBI
Celera	6	45,164,388 - 45,190,375 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,331,943 - 43,357,789 (+)	NCBI		HuRef
CHM1_1	6	43,615,830 - 43,641,745 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,473,769 - 43,501,327 (+)	NCBI		T2T-CHM13v2.0

Rsph9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,432,964 - 46,455,171 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,432,961 - 46,455,142 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,122,038 - 46,144,242 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,122,035 - 46,144,216 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,266,226 - 46,281,147 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,592,858 - 45,607,779 (-)	NCBI		MGSCv36	mm8
Celera	17	49,560,383 - 49,575,628 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.87	NCBI

Rsph9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,437,281 - 9,448,514 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,437,281 - 9,448,514 (+)	NCBI	ChiLan1.0	ChiLan1.0

RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,143,180 - 58,169,180 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,012,980 - 54,038,966 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,234,531 - 43,261,040 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,524,405 - 44,550,574 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,524,408 - 44,550,569 (+)	Ensembl	panpan1.1		panPan2

RSPH9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,093,016 - 12,105,721 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,096,568 - 12,105,721 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,119,216 - 12,131,955 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,576,751 - 12,589,489 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,576,810 - 12,589,490 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,101,802 - 12,114,539 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,188,811 - 12,201,535 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,282,317 - 12,295,061 (+)	NCBI		UU_Cfam_GSD_1.0

Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,591,103 - 47,696,663 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,350,450 - 16,369,356 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,351,794 - 16,369,092 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RSPH9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,625,656 - 38,641,408 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,624,942 - 38,641,410 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,208,277 - 44,223,937 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RSPH9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,497,793 - 28,520,678 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,495,424 - 28,520,518 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,697,177 - 43,720,335 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rsph9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,029,449 - 16,041,775 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,020,566 - 16,042,088 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rsph9
109 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	108
Count of miRNA genes:	90
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000068747
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat

Markers in Region

RH127819

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,853,354 - 14,853,569 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,238,387 - 17,238,601	NCBI	Rnor6.0
Rnor_5.0	9	16,133,590 - 16,133,804	UniSTS	Rnor5.0
RGSC_v3.4	9	10,419,112 - 10,419,326	UniSTS	RGSC3.4
Celera	9	12,600,376 - 12,600,590	UniSTS
RH 3.4 Map	9	63.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068747 ⟹ ENSRNOP00000061272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,840,115 - 14,860,062 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,225,122 - 17,245,093 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080816 ⟹ ENSRNOP00000075414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,840,115 - 14,853,882 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,225,123 - 17,237,989 (+)	Ensembl

RefSeq Acc Id:

NM_001108205 ⟹ NP_001101675

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,337,681 - 22,350,515 (+)	NCBI
mRatBN7.2	9	14,840,115 - 14,852,950 (+)	NCBI
Rnor_6.0	9	17,225,122 - 17,245,093 (+)	NCBI
Rnor_5.0	9	16,120,436 - 16,140,296 (+)	NCBI
RGSC_v3.4	9	10,405,162 - 10,425,818 (+)	RGD
Celera	9	12,587,282 - 12,607,082 (+)	RGD

Sequence:

show sequence

CCATGGAGACGGCTTCTACCCGCCAGACCAGCTTGGAGGGGAACGGCTGGACTGATGGACGCGG
ACAGCCTCTTGTTGTCGCTGGAGCTGGCATCTGGCAGTGGGCAGGGTCTCAGCCCGGACCGTCG
GGCCTCGCTGCTCACGTCCCTTATGCTGGTTAAACGGGATTACCGCTTCGCGCGGGTCCTCTTC
TGGGGCCGCATCCTCGGCCTTGTCGCAGATTACTACATCGCACAGGGCCTGAGTGAGGACCAGC
TCGCACCACGCAAGACGCTCTACAGCCTGAACTGCACAGAGTGGAGCCTCTTGCCCCCGGCCAC
AGAGGAGATGGTGACACAGACATCTGTGGTGAGTGGCCGCTTCATGGGTGATCCTTCACACGAG
TATGAACACACCGAGCTCCAGAAGGTCAGCGAAGGTGACAAGGTCTTTGATGAAGAAGTGGTGG
TCCAAATCAAGGAGGAGACTCGCTTGGTGTCCATCATCGACCAGATTGACAAGGCTGTGGCCAT
CGTCCCTCGAGGTGCCCTCTTCAAGACCCCTTTTGGAGTCACCCACGTCAATCGGACCTTTGAA
GGCCTGCCCTTGTCTGAGATCAAGAAGCTTAGCTCGTACTTCCACTTCAGGGAGGCCATTGACC
TGAAGAACAAGACCTTGCTTGAGAAGGCAGACTTGGAGCCCTCACTGGATTTCCTGGACTCCCT
GGAGTATGATATCCCCAGAGTATAAATATCTGTATTTCTTGATGGTCTTTTGGGGATCGTGATG
CACAGGTTGATAAGGACTACACTACAAGATTAGTTTGCTGGTTTTAGTGGATGCTATTTTCCTT
CATCAACAAGCCACAATAAAGTACCTGAACCCTAGGCTTCCTTCCCCCTGCTTCTGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101675	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18794	(Get FASTA)	NCBI Sequence Viewer
	EDM18795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061272.1
	ENSRNOP00000075414.1

RefSeq Acc Id:

NP_001101675 ⟸ NM_001108205

- UniProtKB:

A0A0G2KAI9 (UniProtKB/TrEMBL), A6JIT8 (UniProtKB/TrEMBL), A6JIT7 (UniProtKB/TrEMBL), D4A5Y7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRFARVLFWGRILGLVADYYIAQGLS
EDQLAPRKTLYSLNCTEWSLLPPATEEMVTQTSVVSGRFMGDPSHEYEHTELQKVSEGDKVFDE
EVVVQIKEETRLVSIIDQIDKAVAIVPRGALFKTPFGVTHVNRTFEGLPLSEIKKLSSYFHFRE
AIDLKNKTLLEKADLEPSLDFLDSLEYDIPRV

hide sequence

Ensembl Acc Id:

ENSRNOP00000075414 ⟸ ENSRNOT00000080816

Ensembl Acc Id:

ENSRNOP00000061272 ⟸ ENSRNOT00000068747

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KAI9-F1-model_v2	AlphaFold	A0A0G2KAI9	1-276	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696540

Promoter ID:

EPDNEW_R7059

Type:

multiple initiation site

Name:

Rsph9_1

Description:

radial spoke head 9 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,225,126 - 17,225,186	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310693	AgrOrtholog
BioCyc Gene	G2FUF-28203	BioCyc
Ensembl Genes	ENSRNOG00000019474	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068747.3	UniProtKB/TrEMBL
	ENSRNOT00000080816.2	UniProtKB/TrEMBL
KEGG Report	rno:316238	UniProtKB/TrEMBL
NCBI Gene	316238	ENTREZGENE
PANTHER	MITOCHONDRIAL RIBOSOMAL PROTEIN S18	UniProtKB/TrEMBL
	RADIAL SPOKE HEAD PROTEIN 9 HOMOLOG	UniProtKB/TrEMBL
PhenoGen	Rsph9	PhenoGen
RatGTEx	ENSRNOG00000019474	RatGTEx
UniProt	A0A0G2KAI9	ENTREZGENE, UniProtKB/TrEMBL
	A6JIT7	ENTREZGENE, UniProtKB/TrEMBL
	A6JIT8	ENTREZGENE, UniProtKB/TrEMBL
	D4A5Y7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-13	Rsph9	radial spoke head component 9	Rsph9	radial spoke head 9 homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-04-13	Rsph9	radial spoke head 9 homolog	Rsph9	radial spoke head 9 homolog (Chlamydomonas)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-12	Rsph9	radial spoke head 9 homolog (Chlamydomonas)	RGD1310693	similar to RIKEN cDNA 1700027N10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310693	similar to RIKEN cDNA 1700027N10	RGD1310693_predicted	similar to RIKEN cDNA 1700027N10 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310693_predicted	similar to RIKEN cDNA 1700027N10 (predicted)	LOC316238_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC316238_predicted	similar to RIKEN cDNA 1700027N10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM