BW291_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: BW291_H (Body Weight QTL 291 (human)) Homo sapiens

Symbol: BW291_H
Name: Body Weight QTL 291 (human)
RGD ID: 1643495
Trait: Body weight
Measurement Type: BMI
LOD Score: 2.13
P Value: Not Available
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3861 - 19,321,359RGD_MAPPER_PIPELINEGRCh38
GRCh376820,498 - 12,860,341RGDGRCh37
Build 3661 - 12,968,327RGDNCBI36
Population Stats: Dutch participants in the Netherlands Twin Registry
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. Further evidence for a QTL influencing body mass index on chromosome 7p from a genome-wide scan in Dutch families. Heijmans BT, etal., Twin Res. 2004 Apr;7(2):192-6.


1 to 20 of 1498 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
10413273WBP1LP12WBP1L pseudogene 1269494395449Human
1347170OR4F1Polfactory receptor family 4 subfamily F member 1 pseudogene6105919106856Human
38613403LOC107986552uncharacterized LOC1079865526109026111100Human
10450696SEPTIN14P6septin 14 pseudogene 66140264148159Human
7247092CICP18capicua transcriptional repressor pseudogene 186142230145994Human
329826598LOC129995517ATAC-STARR-seq lymphoblastoid active region 237966156143156232Human
329830538LOC129995518ATAC-STARR-seq lymphoblastoid active region 237976156273156362Human
155634543ANKRD18FPankyrin repeat domain 18F, pseudogene6167607170631Human
38671107LIRIL2RlincRNA regulator of IL2RA6180395187746Human
1601921LINC03066long intergenic non-protein coding RNA 30666181466205484Human
329838952LOC129995519ATAC-STARR-seq lymphoblastoid active region 237986189309189368Human
329843340LOC129995520ATAC-STARR-seq lymphoblastoid active region 237996193965194034Human
329843607LOC129995521ATAC-STARR-seq lymphoblastoid active region 238006209211209260Human
329841012LOC129995522ATAC-STARR-seq lymphoblastoid active region 238016210072210271Human
329844798LOC129995523ATAC-STARR-seq lymphoblastoid active region 238026215727215886Human
329832042LOC129995524ATAC-STARR-seq lymphoblastoid active region 238036216959217198Human
329830141LOC129995525ATAC-STARR-seq lymphoblastoid active region 238046218069218118Human
329831463LOC129995526ATAC-STARR-seq lymphoblastoid active region 238056218939218988Human
329839479LOC129995527ATAC-STARR-seq lymphoblastoid active region 238066220800220879Human
329829113LOC129995528ATAC-STARR-seq lymphoblastoid active region 238076225435225594Human

1 to 20 of 1498 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
1741297GDB:180362187663212666321452Humanregion

Flank 1: (D6S942)
Human AssemblyChrPosition (strand)Source
GRCh376820,498 - 820,715UniSTS
Celera62,047,784 - 2,047,997UniSTS
HuRef6687,710 - 687,923UniSTS
Marshfield Genetic Map6 RGD
Marshfield Genetic Map60.0UniSTS
deCODE Assembly Map60.0UniSTS
Peak: (GDB:180362)
Human AssemblyChrPosition (strand)Source
GRCh3866,321,266 - 6,321,452RGD
GRCh3766,321,499 - 6,321,685UniSTS
Build 3666,266,498 - 6,266,684RGD
Celera67,551,153 - 7,551,347RGD
Cytogenetic Map6p25.3-p24.3UniSTS
HuRef66,197,367 - 6,197,561UniSTS
Flank 2: (D6S1006)
Human AssemblyChrPosition (strand)Source
GRCh37612,860,151 - 12,860,341UniSTS
Build 36612,968,137 - 12,968,327RGD
Celera614,088,204 - 14,088,400RGD
Cytogenetic Map6p24.1UniSTS
HuRef612,792,657 - 12,792,853UniSTS
Marshfield Genetic Map626.71UniSTS
Marshfield Genetic Map626.71RGD
deCODE Assembly Map630.18UniSTS


1 to 10 of 4004 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406960195GWAS609171_Hreticulocyte count QTL GWAS609171 (human)5e-09reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)671574337157434Human
406960197GWAS609173_Hreticulocyte count QTL GWAS609173 (human)2e-11reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)61632274716322748Human
407377997GWAS1026973_Hobsolete_red blood cell distribution width QTL GWAS1026973 (human)2e-08obsolete_red blood cell distribution width633697393369740Human
597050259GWAS1146333_Huterine fibroid QTL GWAS1146333 (human)0.000006uterine fibroid61251079812510799Human
597279647GWAS1375721_Hhypothyroidism QTL GWAS1375721 (human)4e-12hypothyroidism6403799403800Human
597607320GWAS1664180_Hsystolic blood pressure QTL GWAS1664180 (human)6e-22systolic blood pressuresystolic blood pressure (CMO:0000004)61290372512903726Human
597263262GWAS1359336_Hserum metabolite measurement QTL GWAS1359336 (human)0.000006serum metabolite measurement61306033613060337Human
597058462GWAS1154536_Hopen-angle glaucoma QTL GWAS1154536 (human)2e-15open-angle glaucoma6642017642018Human
597402514GWAS1498588_Hemphysema imaging measurement QTL GWAS1498588 (human)0.000004emphysema imaging measurement61857506918575070Human
406992969GWAS641945_Hmean corpuscular hemoglobin concentration QTL GWAS641945 (human)2e-70mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)61629053016290531Human

1 to 10 of 4004 rows


Note Type Note Reference
qtl_general Study Method: genome-wide linkage scan 1642951
qtl_map chromosome position 6p25.1, 9.18 cM 1642951
qtl_population Dutch participants in the Netherlands Twin Registry 1642951
qtl_population_details 803 individuals from 192 two-generation families, including 315 twins and 210 siblings 1642951
qtl_statistics_details Multipoint IBD-estimation and variance components linkage analysis that included covariates was carried out using Merlin 0.9.12. 1642951