GWAS1188995_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1188995_H (inflammatory bowel disease QTL GWAS1188995 (human)) Homo sapiens

Symbol: GWAS1188995_H
Name: inflammatory bowel disease QTL GWAS1188995 (human)
RGD ID: 597092921
Trait: inflammatory bowel disease
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3863,420,172 - 3,420,173RGD_MAPPER_PIPELINEGRCh38
GRCh3763,420,406 - 3,420,407RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1188995_HHumaninflammatory bowel disease  IAGPrs13204048405850206 GWAS_CATALOGPMID:26192919

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1188995_HHumanInflammation of the large intestine  IAGPrs13204048405850206 GWAS_CATALOGPMID:26192919
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1188995_HHumaninflammatory bowel disease  IAGPrs13204048405850206 GWAS_CATALOGPMID:26192919

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1347503SLC22A23solute carrier family 22 member 23632689733457050Human


Peak: (rs13204048)
Human AssemblyChrPosition (strand)Source
GRCh3863,420,172 - 3,420,173RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597092723GWAS1188797_HCrohn's disease QTL GWAS1188797 (human)3e-08intestine integrity trait (VT:0010554)634201723420173Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
597092921GWAS1188995_Hinflammatory bowel disease QTL GWAS1188995 (human)0.000001inflammatory bowel disease634201723420173Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1188995_H GCST003043 Inflammatory bowel disease 12,882 European ancestry cases, 21,770 European ancestry controls A 0.61 0.000001 6 rs13204048 1.0509611 inflammatory bowel disease (EFO:0003767)
 PMID:26192919
GWAS1188797_H GCST003044 Crohn's disease 5,956 European ancestry cases, 14,927 European ancestry controls A 0.61 3E-8 7.523 rs13204048 1.0708697 Crohn's disease (EFO:0000384)
 PMID:26192919
Database
Acc Id
Source(s)
GWAS Catalog GCST003043 GWAS Catalog

Note Type Note Reference