GWAS1312056_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1312056_H (pulse pressure measurement QTL GWAS1312056 (human)) Homo sapiens

Symbol: GWAS1312056_H
Name: pulse pressure measurement QTL GWAS1312056 (human)
RGD ID: 597215982
Trait: pulse pressure measurement
Measurement Type: pulse pressure   (CMO:0000292)    
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,247,111 - 7,247,112RGD_MAPPER_PIPELINEGRCh38
GRCh3767,247,344 - 7,247,345RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1312056_HHumanpulse pressure  IAGPrs35742417405850206 GWAS_CATALOGPMID:38689001

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1312056_HHumanpulse pressure measurement  IAGPrs35742417405850206 GWAS_CATALOGPMID:38689001

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs35742417)
Human AssemblyChrPosition (strand)Source
GRCh3867,247,111 - 7,247,112RGD_MAPPER_PIPELINE


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597244959GWAS1341033_Hsex hormone-binding globulin measurement QTL GWAS1341033 (human)3e-12sex hormone-binding globulin measurement672471117247112Human
597297053GWAS1393127_HBMI-adjusted hip circumference QTL GWAS1393127 (human)2e-11BMI-adjusted hip circumferencehip circumference (CMO:0000014)672471117247112Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597204244GWAS1300318_Htype 2 diabetes mellitus QTL GWAS1300318 (human)0.000006type 2 diabetes mellitus672471117247112Human
597204424GWAS1300498_Htype 2 diabetes mellitus QTL GWAS1300498 (human)0.000003type 2 diabetes mellitus672471117247112Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
596951495GWAS1071014_HHbA1c measurement QTL GWAS1071014 (human)4e-09HbA1c measurement672471117247112Human
597204417GWAS1300491_Htype 2 diabetes mellitus QTL GWAS1300491 (human)0.0000002type 2 diabetes mellitus672471117247112Human

1 to 10 of 30 rows


1 to 20 of 20 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1312056_H GCST90310296 Pulse pressure 1,028,980 European ancestry individuals A NR 8E-12 11.097 rs35742417 0.1537 pulse pressure measurement (EFO:0005763)
 PMID:38689001
GWAS1141802_H GCST010083 Hemoglobin levels 684,122 European ancestry individuals A NR 3E-21 20.523 rs35742417 0.026 hemoglobin measurement (EFO:0004509)
 PMID:32327693
GWAS1730510_H GCST90314667 ENO2/RWDD1 protein level ratio 43,509 European ancestry individuals ? NR 2E-16 15.699 rs35742417 0.0722157 ENO2/RWDD1 protein level ratio in blood (OBA:2054686)
 PMID:38412862
GWAS1741648_H GCST007858 Fasting blood glucose adjusted for BMI up to 33,231 non-diabetic individuals A 0.21 8E-9 8.097 rs35742417 0.024 obsolete_fasting blood glucose measurement (EFO:0004465)
 PMID:25625282
GWAS1744778_H GCST90256408 Fasting glucose 10,177 African American individuals, 651 East Asian ancestry individuals, 113,279 European ancestry individuals, 3,153 Hispanic individuals, 2,405 South Asian ancestry individuals A 0.182714 1E-16 16 rs35742417 0.019 obsolete_fasting blood glucose measurement (EFO:0004465)
 PMID:39280063
GWAS1300318_H GCST007517 Type 2 diabetes up to 48,286 European ancestry cases, up to 250,671 European ancestry controls C 0.807 0.000006 5.222 rs35742417 1.04 PMID:29632382
GWAS1300491_H GCST007516 Type 2 diabetes (adjusted for BMI) 48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls C NR 2E-7 6.699 rs35742417 1.04 PMID:29632382
GWAS1300498_H GCST007518 Type 2 diabetes (adjusted for BMI) up to 48,286 European ancestry cases, up to 250,671 European ancestry controls C 0.807 0.000003 5.523 rs35742417 1.04 PMID:29632382
GWAS1301054_H GCST007515 Type 2 diabetes 48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls C 0.836 6E-8 7.222 rs35742417 1.04 PMID:29632382
GWAS1340395_H GCST90019508 Blood glucose levels 313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals A NR 2E-23 22.699 rs35742417 0.0321 glucose measurement (EFO:0004468)
 PMID:33462484
GWAS1341033_H GCST90019518 Sex hormone-binding globulin levels 310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals A NR 3E-12 11.523 rs35742417 0.0226 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:33462484
GWAS1342188_H GCST90019509 Glycated hemoglobin levels 327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals A NR 3E-29 28.523 rs35742417 0.0354 HbA1c measurement (EFO:0004541)
 PMID:33462484
GWAS1348032_H GCST90256420 Glycated hemoglobin HbA1c levels 8,819 African American individuals, 2,644 East Asian ancestry individuals, 122,446 European ancestry individuals, 2,327 Hispanic individuals, 7,824 South Asian ancestry individuals A 0.172553 4E-9 8.398 rs35742417 0.01 HbA1c measurement (EFO:0004541)
 PMID:39280063
GWAS1352499_H GCST90019524 Urate levels 342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals A NR 1E-9 9 rs35742417 0.0188 urate measurement (EFO:0004531)
 PMID:33462484
GWAS1365680_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men A NR 9E-12 11.046 rs35742417 0.0268392 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1367979_H GCST90239661 Triglyceride levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 1E-8 8 rs35742417 N/A triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS1376446_H GCST90018958 Hemoglobin A1c levels 344,182 European ancestry individuals, 71,221 East Asian ancestry individuals A NR 1E-26 26 rs35742417 0.0312 hemoglobin A1 measurement (EFO:0007629)
 PMID:34594039
GWAS1390318_H GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls C 0.824913 7E-7 6.155 rs35742417 0.0516 PMID:39379762
GWAS1393127_H GCST90020028 Hip circumference adjusted for BMI 219,872 British ancestry women A NR 2E-11 10.699 rs35742417 0.0241635 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1416249_H GCST90244680 Triglyceride levels in non-type 2 diabetes 402,944 European ancestry individuals ? NR 4E-10 9.398 rs35742417 N/A triglyceride measurement (EFO:0004530)
 PMID:36269708
1 to 20 of 20 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90310296 GWAS Catalog

Note Type Note Reference