GWAS1442193_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1442193_H (body mass index QTL GWAS1442193 (human)) Homo sapiens

Symbol: GWAS1442193_H
Name: body mass index QTL GWAS1442193 (human)
RGD ID: 597346119
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3865,978,836 - 5,978,837RGD_MAPPER_PIPELINEGRCh38
GRCh3765,979,069 - 5,979,070RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1442193_HHumanbody mass index (BMI)  IAGPrs9378999405850206 GWAS_CATALOGPMID:37280435

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1442193_HHumanbody mass index  IAGPrs9378999405850206 GWAS_CATALOGPMID:37280435

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs9378999)
Human AssemblyChrPosition (strand)Source
GRCh3865,978,836 - 5,978,837RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597029894GWAS1125968_Hbody mass index QTL GWAS1125968 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)659788365978837Human
597181179GWAS1277253_Hbody mass index QTL GWAS1277253 (human)3e-09body mass indexbody mass index (BMI) (CMO:0000105)659788365978837Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597346119GWAS1442193_Hbody mass index QTL GWAS1442193 (human)3e-08body mass indexbody mass index (BMI) (CMO:0000105)659788365978837Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
597178854GWAS1274928_Hbody mass index QTL GWAS1274928 (human)9e-11body mass indexbody mass index (BMI) (CMO:0000105)659788365978837Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1442193_H GCST90301650 Body mass index 441,761 European ancestry individuals T NR 3E-8 7.523 rs9378999 0.011591 body mass index (EFO:0004340)
 PMID:37280435
GWAS1125968_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 2E-9 8.699 rs9378999 N/A body mass index (EFO:0004340)
 PMID:30595370
GWAS1274928_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 9E-11 10.046 rs9378999 0.0114 body mass index (EFO:0004340)
 PMID:36581621
GWAS1277253_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 3E-9 8.523 rs9378999 0.01286 body mass index (EFO:0004340)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90301650 GWAS Catalog

Note Type Note Reference