GWAS1521694_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1521694_H (phosphatidylcholine measurement QTL GWAS1521694 (human)) Homo sapiens

Symbol: GWAS1521694_H
Name: phosphatidylcholine measurement QTL GWAS1521694 (human)
RGD ID: 597425620
Trait: phosphatidylcholine measurement
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38611,072,089 - 11,072,090RGD_MAPPER_PIPELINEGRCh38
GRCh37611,072,322 - 11,072,323RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1521694_HHumanphosphatidylcholine measurement  IAGPrs9393915405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6770589ELOVL2-AS1ELOVL2 antisense RNA 161104375811079144Human


Peak: (rs9393915)
Human AssemblyChrPosition (strand)Source
GRCh38611,072,089 - 11,072,090RGD_MAPPER_PIPELINE


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597488317GWAS1584391_Hphosphatidylcholine 39:5 measurement QTL GWAS1584391 (human)3e-08phosphatidylcholine 39:5 measurement61107208911072090Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597425620GWAS1521694_Hphosphatidylcholine measurement QTL GWAS1521694 (human)7e-10phosphatidylcholine measurement61107208911072090Human
597490195GWAS1586269_Hdocosapentaenoate n3 DPA; 22:5n3-to-X-12627 ratio QTL GWAS1586269 (human)1e-22docosapentaenoate n3 DPA; 22:5n3-to-X-12627 ratio61107208911072090Human
597488300GWAS1584374_Hphosphatidylcholine 38:5 measurement QTL GWAS1584374 (human)6e-11glycerophosphocholine amount (VT:0011004)61107208911072090Human

1 to 10 of 16 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1521694_H GCST90060818 Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels 5,662 Pakistani ancestry individuals G NR 7E-10 9.155 rs9393915 0.0788 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1584374_H GCST90024292 Phosphatidylcholine (38:5) (a) levels 4,492 European ancestry individuals T NR 6E-11 10.222 rs9393915 0.17 phosphatidylcholine 38:5 measurement (EFO:0010387)
 PMID:35668104
GWAS1584391_H GCST90024297 Phosphatidylcholine (39:5) (b) levels 4,492 European ancestry individuals T NR 3E-8 7.523 rs9393915 0.144 phosphatidylcholine 39:5 measurement (EFO:0021476)
 PMID:35668104
GWAS1584979_H GCST90024266 Phosphatidylcholine (18:0_22:5) (n3) levels/Phosphatidylcholine (20:1_20:4) levels 4,492 European ancestry individuals T NR 7E-11 10.155 rs9393915 0.169 phosphatidylcholine measurement (EFO:0010226)
 PMID:35668104
GWAS1586269_H GCST90243904 Docosapentaenoate n3 DPA; 22:5n3-to-X-12627 ratio 5,428 European ancestry individuals T 0.22 1E-22 22 rs9393915 0.042 docosapentaenoate n3 DPA (EFO:0021389)
 PMID:24816252
Database
Acc Id
Source(s)
GWAS Catalog GCST90060818 GWAS Catalog

Note Type Note Reference