GWAS1267816_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1267816_H (protein measurement QTL GWAS1267816 (human)) Homo sapiens

Symbol: GWAS1267816_H
Name: protein measurement QTL GWAS1267816 (human)
RGD ID: 597171742
Trait: protein measurement
LOD Score: Not Available
P Value: 2E-165
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3863,012,544 - 3,012,545RGD_MAPPER_PIPELINEGRCh38
GRCh3763,012,778 - 3,012,779RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1267816_HHumanprotein measurement  IAGPrs17300141405850206 GWAS_CATALOGPMID:34648354

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1351629NQO2N-ribosyldihydronicotinamide:quinone dehydrogenase 2629998943019755Human


Peak: (rs17300141)
Human AssemblyChrPosition (strand)Source
GRCh3863,012,544 - 3,012,545RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597171742GWAS1267816_Hprotein measurement QTL GWAS1267816 (human)2e-165protein measurement630125443012545Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
597301652GWAS1397726_Hribosyldihydronicotinamide dehydrogenase [quinone] measurement QTL GWAS1397726 (human)4e-37ribosyldihydronicotinamide dehydrogenase [quinone] measurement630125443012545Human
597119352GWAS1215426_Hblood protein measurement QTL GWAS1215426 (human)2e-37blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)630125443012545Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1267816_H GCST90249391 Ribosyldihydronicotinamide dehydrogenase [quinone] levels 10,708 European ancestry individuals A 0.03 2E-165 164.699 rs17300141 1.053 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1215426_H GCST90090801 Serum levels of protein NQO2 5,367 Icelandic ancestry individuals A 0.0236 2E-37 36.699 rs17300141 0.802299 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1397726_H GCST90242679 Ribosyldihydronicotinamide dehydrogenase [quinone] levels (NQO2.9754.33.3) 3,301 European ancestry individuals A 0.031 4E-37 36.398 rs17300141 0.89 ribosyldihydronicotinamide dehydrogenase [quinone] measurement (EFO:0803298)
 PMID:29875488
Database
Acc Id
Source(s)
GWAS Catalog GCST90249391 GWAS Catalog

Note Type Note Reference