GWAS1409268_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1409268_H (cortical thickness QTL GWAS1409268 (human)) Homo sapiens

Symbol: GWAS1409268_H
Name: cortical thickness QTL GWAS1409268 (human)
RGD ID: 597313194
Trait: cortical thickness
LOD Score: Not Available
P Value: 9.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,736,184 - 7,736,185RGD_MAPPER_PIPELINEGRCh38
GRCh3767,736,417 - 7,736,418RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1409268_HHumancortical thickness  IAGPrs199205405850206 GWAS_CATALOGPMID:34910505

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353193BMP6bone morphogenetic protein 6677260997881728Human


Peak: (rs199205)
Human AssemblyChrPosition (strand)Source
GRCh3867,736,184 - 7,736,185RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597313194GWAS1409268_Hcortical thickness QTL GWAS1409268 (human)9e-13cortical thickness677361847736185Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597128418GWAS1224492_Hcortical thickness QTL GWAS1224492 (human)3e-14cortical thickness677361847736185Human
597136783GWAS1232857_Hneuroimaging measurement QTL GWAS1232857 (human)3e-12neuroimaging measurement677361847736185Human

1 to 10 of 14 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1409268_H GCST90095131 Vertex-wise cortical thickness 33,748 European ancestry individuals G 0.22 9E-13 12.046 rs199205 7.14 cortical thickness (EFO:0004840)
 PMID:34910505
GWAS1718652_H GCST90091060 Cortical surface area 35,657 White British ancestry individuals G 0.1902 2E-11 10.699 rs199205 N/A cerebral cortex area attribute (OBA:2045267)
 PMID:34560273
GWAS1224492_H GCST90091061 Cortical thickness 35,657 White British ancestry individuals G 0.1902 3E-14 13.523 rs199205 N/A cortical thickness (EFO:0004840)
 PMID:34560273
GWAS1232857_H GCST90239729 Brain morphology (MOSTest) 33,735 white British ancestry individuals ? NR 3E-12 11.523 rs199205 N/A neuroimaging measurement (EFO:0004346)
 PMID:35164939
GWAS1783915_H GCST90095129 Vertex-wise sulcal depth 33,748 European ancestry individuals G 0.22 3E-20 19.523 rs199205 9.21 brain attribute (OBA:2045210)
 PMID:34910505
GWAS1784966_H GCST90095130 Vertex-wise cortical surface area 33,748 European ancestry individuals G 0.22 1E-9 9 rs199205 6.07 cerebral cortex area attribute (OBA:2045267)
 PMID:34910505
Database
Acc Id
Source(s)
GWAS Catalog GCST90095131 GWAS Catalog

Note Type Note Reference