GWAS1427060_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1427060_H (basal cell carcinoma QTL GWAS1427060 (human)) Homo sapiens

Symbol: GWAS1427060_H
Name: basal cell carcinoma QTL GWAS1427060 (human)
RGD ID: 597330986
Trait: basal cell carcinoma
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38615,388,046 - 15,388,047RGD_MAPPER_PIPELINEGRCh38
GRCh37615,388,277 - 15,388,278RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427060_HHumanbasal cell carcinoma  IAGPrs2237159405850206 GWAS_CATALOGPMID:38182794

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427060_HHumanBasal cell carcinoma  IAGPrs2237159405850206 GWAS_CATALOGPMID:38182794
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427060_HHumanbasal cell carcinoma  IAGPrs2237159405850206 GWAS_CATALOGPMID:38182794

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1354253JARID2jumonji and AT-rich interaction domain containing 261524606915522042Human


Peak: (rs2237159)
Human AssemblyChrPosition (strand)Source
GRCh38615,388,046 - 15,388,047RGD_MAPPER_PIPELINE


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597330986GWAS1427060_Hbasal cell carcinoma QTL GWAS1427060 (human)4e-08basal cell carcinoma61538804615388047Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human

1 to 10 of 12 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1427060_H GCST90328132 Basal cell carcinoma 49,905 European ancestry cases, 752,392 European ancestry controls A NR 4E-8 7.398 rs2237159 1.0397 basal cell carcinoma (EFO:0004193)
 PMID:38182794
Database
Acc Id
Source(s)
GWAS Catalog GCST90328132 GWAS Catalog

Note Type Note Reference