FAM136BP (family with sequence similarity 136 member B, pseudogene) - Rat Genome Database

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Gene: FAM136BP (family with sequence similarity 136 member B, pseudogene) Homo sapiens
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Symbol: FAM136BP
Name: family with sequence similarity 136 member B, pseudogene
RGD ID: 1345211
HGNC Page HGNC:21110
Description: INTERACTS WITH temozolomide
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: C6orf87; dJ40E16.3; FAM136B; hypothetical protein LOC387071
Related Functional Gene: FAM136A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3863,045,363 - 3,046,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl63,045,384 - 3,045,800 (+)EnsemblGRCh38hg38GRCh38
GRCh3763,045,597 - 3,046,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,045,618 - 3,046,034 (+)NCBINCBI36Build 36hg18NCBI36
Celera64,274,644 - 4,275,060 (+)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef62,918,761 - 2,919,177 (+)NCBIHuRef
CHM1_163,047,999 - 3,048,415 (+)NCBICHM1_1
T2T-CHM13v2.062,914,262 - 2,914,899 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
temozolomide  (EXP)

References
Additional References at PubMed
PMID:20877624  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENST00000428729
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
133 326 217 191 638 262 431 2 109 364 77 291 967 812 22 432 137 521 323 37

Sequence


Ensembl Acc Id: ENST00000428729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl63,045,384 - 3,045,800 (+)Ensembl
RefSeq Acc Id: NM_001012983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3763,045,618 - 3,046,034 (+)RGD
Celera64,274,644 - 4,275,060 (+)RGD
HuRef62,918,762 - 2,919,178 (+)RGD
Protein Sequences
GenBank Protein EAW55113 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC FAM136BP COSMIC
Ensembl Genes ENSG00000232654 Ensembl
GTEx ENSG00000232654 GTEx
HGNC ID HGNC:21110 ENTREZGENE
Human Proteome Map FAM136BP Human Proteome Map
NCBI Gene 387071 ENTREZGENE
PharmGKB PA162386333 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 FAM136BP  family with sequence similarity 136 member B, pseudogene    family with sequence similarity 136, member B, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 FAM136BP  family with sequence similarity 136, member B, pseudogene  FAM136B  family with sequence similarity 136, member B  Symbol and/or name change 5135510 APPROVED