GWAS1208952_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1208952_H (systemic lupus erythematosus QTL GWAS1208952 (human)) Homo sapiens

Symbol: GWAS1208952_H
Name: systemic lupus erythematosus QTL GWAS1208952 (human)
RGD ID: 597112878
Trait: systemic lupus erythematosus
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38616,636,230 - 16,636,231RGD_MAPPER_PIPELINEGRCh38
GRCh37616,636,461 - 16,636,462RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1208952_HHumansystemic lupus erythematosus  IAGPrs909788405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:28714469


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1344585ATXN1ataxin 161629911216761460Human
329816343LOC129995916ATAC-STARR-seq lymphoblastoid active region 2411261663620816636377Human


Peak: (rs909788)
Human AssemblyChrPosition (strand)Source
GRCh38616,636,230 - 16,636,231RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597228571GWAS1324645_Hself reported educational attainment QTL GWAS1324645 (human)4e-08self reported educational attainment61663623016636231Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
597112878GWAS1208952_Hsystemic lupus erythematosus QTL GWAS1208952 (human)0.0000001systemic lupus erythematosus61663623016636231Human

1 to 10 of 13 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1208952_H GCST005752 Systemic lupus erythematosus 6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls ? NR 1E-7 7 rs909788 1.1 PMID:28714469
GWAS1324645_H GCST006442 Educational attainment (years of education) up to 1,131,881 European ancestry individuals T 0.4322 4E-8 7.398 rs909788 0.0078 self reported educational attainment (EFO:0004784)
 PMID:30038396
Database
Acc Id
Source(s)
GWAS Catalog GCST005752 GWAS Catalog

Note Type Note Reference