GWAS1391388_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1391388_H (phosphatidylcholine 38:7 measurement QTL GWAS1391388 (human)) Homo sapiens

Symbol: GWAS1391388_H
Name: phosphatidylcholine 38:7 measurement QTL GWAS1391388 (human)
RGD ID: 597295314
Trait: phosphatidylcholine 38:7 measurement
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38611,005,453 - 11,005,454RGD_MAPPER_PIPELINEGRCh38
GRCh37611,005,686 - 11,005,687RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1391388_HHumanphosphatidylcholine 38:7 measurement  IAGPrs2295601405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318475ELOVL2ELOVL fatty acid elongase 261098075911044305Human


Peak: (rs2295601)
Human AssemblyChrPosition (strand)Source
GRCh38611,005,453 - 11,005,454RGD_MAPPER_PIPELINE


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
597295314GWAS1391388_Hphosphatidylcholine 38:7 measurement QTL GWAS1391388 (human)2e-08phosphatidylcholine 38:7 measurement61100545311005454Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597297973GWAS1394047_Hphosphatidylcholine measurement QTL GWAS1394047 (human)2e-10phosphatidylcholine measurement61100545311005454Human
597294056GWAS1390130_Hphosphatidylcholine measurement QTL GWAS1390130 (human)8e-15phosphatidylcholine measurement61100545311005454Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 16 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1391388_H GCST90024295 Phosphatidylcholine (38:7) (c) levels 4,492 European ancestry individuals A NR 2E-8 7.699 rs2295601 0.143 phosphatidylcholine 38:7 measurement (EFO:0021475)
 PMID:35668104
GWAS1375445_H GCST90179203 Docosahexaenoic acid levels 7,142 European ancestry individuals A 0.23 5E-18 17.302 rs2295601 0.17 docosahexaenoic acid measurement (EFO:0007761)
 PMID:32150548
GWAS1389561_H GCST90024268 Phosphatidylcholine (18:0_22:6) levels 4,492 European ancestry individuals A NR 3E-8 7.523 rs2295601 0.143 phosphatidylcholine measurement (EFO:0010226)
 PMID:35668104
GWAS1390130_H GCST90010819 Phosphatidylcholine diacyl C42:5 levels 16,508 Caucasian ancestry individuals G 0.7744 8E-15 14.097 rs2295601 7.77 phosphatidylcholine measurement (EFO:0010226)
 PMID:33414548
GWAS1394047_H GCST90024252 Phosphatidylcholine (16:0_22:6) levels 4,492 European ancestry individuals A NR 2E-10 9.699 rs2295601 0.163 phosphatidylcholine measurement (EFO:0010226)
 PMID:35668104
Database
Acc Id
Source(s)
GWAS Catalog GCST90024295 GWAS Catalog

Note Type Note Reference