GWAS1253031_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1253031_H (testosterone measurement QTL GWAS1253031 (human)) Homo sapiens

Symbol: GWAS1253031_H
Name: testosterone measurement QTL GWAS1253031 (human)
RGD ID: 597156957
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 6.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,841,888 - 7,841,889RGD_MAPPER_PIPELINEGRCh38
GRCh3767,842,121 - 7,842,122RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1253031_HHumanserum testosterone level  IAGPrs267190405850206 GWAS_CATALOGPMID:35192695

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1253031_HHumantestosterone measurement  IAGPrs267190405850206 GWAS_CATALOGPMID:35192695

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353193BMP6bone morphogenetic protein 6677260997881728Human


Peak: (rs267190)
Human AssemblyChrPosition (strand)Source
GRCh3867,841,888 - 7,841,889RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597156957GWAS1253031_Htestosterone measurement QTL GWAS1253031 (human)6e-08testosterone measurementserum testosterone level (CMO:0000568)678418887841889Human
597096998GWAS1193072_Htestosterone measurement QTL GWAS1193072 (human)4e-08testosterone measurementserum testosterone level (CMO:0000568)678418887841889Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human

1 to 10 of 14 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1253031_H GCST90104272 Testosterone levels 182,648 European ancestry individuals T 0.424449 6E-8 7.222 rs267190 0.0181892 testosterone measurement (EFO:0004908)
 PMID:35192695
GWAS1193072_H GCST90012112 Total testosterone levels 230,454 European ancestry women G 0.577753 4E-8 7.398 rs267190 0.0152314 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1252243_H GCST90104296 Testosterone levels 4,229 African ancestry individuals, 182,648 European ancestry individuals ? NR 2E-8 7.699 rs267190 5.612 testosterone measurement (EFO:0004908)
 PMID:35192695
Database
Acc Id
Source(s)
GWAS Catalog GCST90104272 GWAS Catalog

Note Type Note Reference