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General

QTL: GWAS565748_H (obsolete Mendelian syndromes with cleft lip/palate QTL GWAS565748 (human)) Homo sapiens

Symbol:

GWAS565748_H

Name:

obsolete Mendelian syndromes with cleft lip/palate QTL GWAS565748 (human)

RGD ID:

406916772

Trait:

obsolete Mendelian syndromes with cleft lip/palate

LOD Score:

Not Available

P Value:

5.0E-6

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	7,736,510 - 7,736,511	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	7,736,743 - 7,736,744	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1353193	BMP6	bone morphogenetic protein 6	6	7726099	7881728	Human

Peak: (rs2068361)

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	7,736,510 - 7,736,511	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
406916772	GWAS565748_H	obsolete Mendelian syndromes with cleft lip/palate QTL GWAS565748 (human)		0.000005	obsolete Mendelian syndromes with cleft lip/palate		6	7736510	7736511	Human
1643377	BW325_H	Body weight QTL 325 (human)	2.32	0.0005	Body fat amount		6	6911960	32911960	Human
1643569	GLUCO21_H	Glucose level QTL 21 (human)		0.021	Glucose level	non-insulin-dependent	6	6911960	32911960	Human
1298458	BW9_H	Body weight QTL 9 (human)	2.7	0.0002	Body fat amount		6	6911960	32911960	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1358854	MULTSCL4_H	Multiple sclerosis susceptibility QTL 4 (human)			Multiple sclerosis susceptibility		6	6911960	32911960	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
596963561	GWAS1083080_H	orofacial cleft QTL GWAS1083080 (human)		0.000005	orofacial cleft		6	7736510	7736511	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1643399	BMD5_H	Bone mineral density QTL 5 (human)	2.32	0.0005	Bone mineral density		6	6911960	32911960	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1083080_H	GCST001442	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	?	0.23	0.000005	5.302	rs2068361	1.64		PMID:22419666

Database	Acc Id	Source(s)
GWAS Catalog	GCST001442	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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QTL: GWAS565748_H (obsolete Mendelian syndromes with cleft lip/palate QTL GWAS565748 (human)) Homo sapiens