GWAS1244173_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1244173_H (COVID-19 QTL GWAS1244173 (human)) Homo sapiens

Symbol: GWAS1244173_H
Name: COVID-19 QTL GWAS1244173 (human)
RGD ID: 597148099
Trait: COVID-19
LOD Score: Not Available
P Value: 9.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3866,161,827 - 6,161,828RGD_MAPPER_PIPELINEGRCh38
GRCh3766,162,060 - 6,162,061RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1244173_HHumanCOVID-19  IAGPrs6928884405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:36662838


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732286F13A1coagulation factor XIII A chain661440846320662Human


Peak: (rs6928884)
Human AssemblyChrPosition (strand)Source
GRCh3866,161,827 - 6,161,828RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597148099GWAS1244173_HCOVID-19 QTL GWAS1244173 (human)9e-08COVID-19661618276161828Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1244173_H GCST90255358 Resistance to COVID-19 infection (Exposed negative vs positive) 306 resistant cases, up to 770 benign, mild or severe controls ? NR 9E-8 7.046 rs6928884 N/A PMID:36662838
Database
Acc Id
Source(s)
GWAS Catalog GCST90255358 GWAS Catalog

Note Type Note Reference