GWAS1339537_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1339537_H (blood protein measurement QTL GWAS1339537 (human)) Homo sapiens

Symbol: GWAS1339537_H
Name: blood protein measurement QTL GWAS1339537 (human)
RGD ID: 597243463
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386403,604 - 403,605RGD_MAPPER_PIPELINEGRCh38
GRCh376403,604 - 403,605RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1339537_HHumanblood protein measurement  IAGPrs1877179405850206 GWAS_CATALOGPMID:33462484

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1339537_HHumanblood protein amount  IAGPrs1877179405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1339537_HHumanblood protein measurement  IAGPrs1877179405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317594IRF4interferon regulatory factor 46391752411443Human


Peak: (rs1877179)
Human AssemblyChrPosition (strand)Source
GRCh386403,604 - 403,605RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
597243463GWAS1339537_Hblood protein measurement QTL GWAS1339537 (human)2e-16blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)6403604403605Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1339537_H GCST90019522 Serum total protein levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals A NR 2E-16 15.699 rs1877179 0.0366 blood protein measurement (EFO:0007937)
 PMID:33462484
GWAS1716496_H GCST90019515 Non-albumin protein levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals A NR 2E-28 27.699 rs1877179 0.0493 level of serum globulin type protein (OBA:2045206)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019522 GWAS Catalog

Note Type Note Reference