Advanced Search (OLGA)

Symbol:

GWAS1268080_H

Name:

smoking initiation QTL GWAS1268080 (human)

RGD ID:

597172006

Trait:

smoking initiation

LOD Score:

Not Available

P Value:

1.0E-16

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	15,726,835 - 15,726,836	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	15,727,066 - 15,727,067	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1268080_H	Human	smoking initiation		IAGP	rs9476900	405850206		GWAS_CATALOG	PMID:36477530

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	15,726,835 - 15,726,836	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
1358854	MULTSCL4_H	Multiple sclerosis susceptibility QTL 4 (human)			Multiple sclerosis susceptibility		6	6911960	32911960	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
1643377	BW325_H	Body weight QTL 325 (human)	2.32	0.0005	Body fat amount		6	6911960	32911960	Human
1643569	GLUCO21_H	Glucose level QTL 21 (human)		0.021	Glucose level	non-insulin-dependent	6	6911960	32911960	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
1298458	BW9_H	Body weight QTL 9 (human)	2.7	0.0002	Body fat amount		6	6911960	32911960	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1643399	BMD5_H	Bone mineral density QTL 5 (human)	2.32	0.0005	Bone mineral density		6	6911960	32911960	Human
597172006	GWAS1268080_H	smoking initiation QTL GWAS1268080 (human)		1e-16	smoking initiation		6	15726835	15726836	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1268080_H	GCST90243985	Smoking initiation	3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals	T	0.253	1E-16	16	rs9476900	0.00768	smoking initiation (EFO:0005670)	PMID:36477530

Database	Acc Id	Source(s)
GWAS Catalog	GCST90243985	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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