GWAS1203666_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1203666_H (Red cell distribution width QTL GWAS1203666 (human)) Homo sapiens

Symbol: GWAS1203666_H
Name: Red cell distribution width QTL GWAS1203666 (human)
RGD ID: 597107592
Trait: Red cell distribution width
Measurement Type: red blood cell distribution width- standard deviation   (CMO:0003232)    
red blood cell distribution width-coefficient of variation   (CMO:0000041)    
LOD Score: Not Available
P Value: 2.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3863,162,144 - 3,162,145RGD_MAPPER_PIPELINEGRCh38
GRCh3763,162,378 - 3,162,379RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203666_HHumanRed cell distribution width  IAGPrs9392465405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs9392465)
Human AssemblyChrPosition (strand)Source
GRCh3863,162,144 - 3,162,145RGD_MAPPER_PIPELINE


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407083011GWAS731987_Hobsolete_red blood cell distribution width QTL GWAS731987 (human)2e-18obsolete_red blood cell distribution width631621443162145Human
407113157GWAS762133_Hmean corpuscular hemoglobin QTL GWAS762133 (human)2e-10mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)631621443162145Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
596976114GWAS1095633_HRed cell distribution width QTL GWAS1095633 (human)2e-18Red cell distribution width631621443162145Human
596954908GWAS1074427_HRed cell distribution width QTL GWAS1074427 (human)1e-23Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)631621443162145Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
596949369GWAS1068888_HRed cell distribution width QTL GWAS1068888 (human)1e-13Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)631621443162145Human
597079396GWAS1175470_Hmean corpuscular hemoglobin QTL GWAS1175470 (human)6e-09mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)631621443162145Human
407405520GWAS1054496_Hobsolete_red blood cell distribution width QTL GWAS1054496 (human)1e-23obsolete_red blood cell distribution width631621443162145Human

1 to 10 of 15 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1203666_H GCST90002404 Red cell distribution width 408,112 British individuals A 0.675806 2E-18 17.699 rs9392465 0.020749154 Red cell distribution width (EFO:0009188)
 PMID:32888494
GWAS1068888_H GCST004621 Red cell distribution width 171,529 European ancestry individuals A 0.6764 1E-13 13 rs9392465 0.02830543 Red cell distribution width (EFO:0009188)
 PMID:27863252
GWAS1175470_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals A 0.675851 6E-9 8.222 rs9392465 0.013278511 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS762133_H GCST007068 Mean corpuscular hemoglobin approximately 443,000 European ancestry individuals ? NR 2E-10 9.699 rs9392465 N/A mean corpuscular hemoglobin (EFO:0004527)
 PMID:30595370
GWAS1074427_H GCST007074 Red cell distribution width approximately 445,000 European ancestry individuals ? NR 1E-23 23 rs9392465 N/A Red cell distribution width (EFO:0009188)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST90002404 GWAS Catalog

Note Type Note Reference