GWAS1149327_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1149327_H (eosinophil count QTL GWAS1149327 (human)) Homo sapiens

Symbol: GWAS1149327_H
Name: eosinophil count QTL GWAS1149327 (human)
RGD ID: 597053253
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: Not Available
P Value: 3.0E-52
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386577,820 - 577,821RGD_MAPPER_PIPELINEGRCh38
GRCh376577,820 - 577,821RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1149327_HHumanblood eosinophil count  IAGPrs9504361405850206 GWAS_CATALOGPMID:32888493

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1149327_HHumaneosinophil quantity  IAGPrs9504361405850206 GWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1149327_HHumaneosinophil count  IAGPrs9504361405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348584EXOC2exocyst complex component 26485154693139Human


Peak: (rs9504361)
Human AssemblyChrPosition (strand)Source
GRCh386577,820 - 577,821RGD_MAPPER_PIPELINE


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597058263GWAS1154337_Heosinophil count QTL GWAS1154337 (human)6e-20eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6577820577821Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
406971877GWAS620853_Hbasophil count, eosinophil count QTL GWAS620853 (human)4e-19eosinophil quantity (VT:0002602)blood granulocyte count (CMO:0000111)6577820577821Human
407024295GWAS673271_Hpit and fissure surface dental caries QTL GWAS673271 (human)0.000006pit and fissure surface dental caries6577820577821Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597071514GWAS1167588_Hpsoriasis QTL GWAS1167588 (human)2e-11psoriasis6577820577821Human
406969423GWAS618399_Heosinophil percentage of leukocytes QTL GWAS618399 (human)8e-18eosinophil quantity (VT:0002602)blood eosinophil count to total leukocyte count ratio (CMO:0000369)6577820577821Human
407079920GWAS728896_Hpsoriasis QTL GWAS728896 (human)0.0000003psoriasis6577820577821Human
597053253GWAS1149327_Heosinophil count QTL GWAS1149327 (human)3e-52eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6577820577821Human

1 to 10 of 19 rows


1 to 13 of 13 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1149327_H GCST90002302 Eosinophil counts 583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.412563 3E-52 51.523 rs9504361 N/A eosinophil count (EFO:0004842)
 PMID:32888493
GWAS593321_H GCST90002382 Eosinophil percentage of white cells 408,112 British individuals G 0.44637 7E-14 13.155 rs9504361 0.01928324 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:32888494
GWAS603754_H GCST004606 Eosinophil counts 172,275 European ancestry individuals G 0.4484 5E-21 20.302 rs9504361 0.03474432 eosinophil count (EFO:0004842)
 PMID:27863252
GWAS613003_H GCST004623 Neutrophil percentage of granulocytes 170,672 European ancestry individuals G 0.4484 7E-16 15.155 rs9504361 0.02990864 neutrophil percentage of granulocytes (EFO:0007994)
 PMID:27863252
GWAS618399_H GCST004600 Eosinophil percentage of white cells 172,378 European ancestry individuals G 0.4484 8E-18 17.097 rs9504361 0.03174511 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:27863252
GWAS620853_H GCST004624 Sum eosinophil basophil counts 171,771 European ancestry individuals G 0.4484 4E-19 18.398 rs9504361 0.03307642 basophil count (EFO:0005090)
eosinophil count (EFO:0004842)
 PMID:27863252
GWAS1153176_H GCST90002298 Eosinophil counts 474,237 European ancestry individuals G 0.446862 8E-56 55.097 rs9504361 0.032321 eosinophil count (EFO:0004842)
 PMID:32888493
GWAS1154337_H GCST90002381 Eosinophil counts 408,112 British individuals G 0.446366 6E-20 19.222 rs9504361 0.024070289 eosinophil count (EFO:0004842)
 PMID:32888494
GWAS626508_H GCST004617 Eosinophil percentage of granulocytes 170,536 European ancestry individuals G 0.4484 4E-17 16.398 rs9504361 0.03123781 eosinophil percentage of granulocytes (EFO:0007996)
 PMID:27863252
GWAS1167588_H GCST005527 Psoriasis 10,588 European ancestry cases, 22,806 European ancestry controls A 0.546 2E-11 10.699 rs9504361 1.12 psoriasis (EFO:0000676)
 PMID:23143594
GWAS673271_H GCST001897 Pit-and-Fissure caries 996 European ancestry individuals G 0.4504 0.000006 5.222 rs9504361 1.156 pit and fissure surface dental caries (EFO:0006338)
 PMID:23470693
GWAS728896_H GCST002738 Psoriasis 4,212 European ancestry cases, 8,032 European ancestry controls A NR 3E-7 6.523 rs9504361 1.163 psoriasis (EFO:0000676)
 PMID:25574825
GWAS750187_H GCST007065 Eosinophil counts approximately 440,000 European ancestry individuals ? NR 3E-55 54.523 rs9504361 N/A eosinophil count (EFO:0004842)
 PMID:30595370
1 to 13 of 13 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002302 GWAS Catalog

Note Type Note Reference