GWAS1459441_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1459441_H (acute myeloid leukemia QTL GWAS1459441 (human)) Homo sapiens

Symbol: GWAS1459441_H
Name: acute myeloid leukemia QTL GWAS1459441 (human)
RGD ID: 597363367
Trait: leukocyte integrity trait   (VT:0010898)    
LOD Score: Not Available
P Value: 1.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3861,028,554 - 1,028,555RGD_MAPPER_PIPELINEGRCh38
GRCh3761,028,789 - 1,028,790RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1459441_HHumanacute myeloid leukemia  IAGPrs1764123405850206 GWAS_CATALOGPMID:27903959

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1459441_HHumanAcute myeloid leukemia  IAGPrs1764123405850206 GWAS_CATALOGPMID:27903959

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1459441_HHumanleukocyte integrity trait  IAGPrs1764123405850206 GWAS_CATALOGPMID:27903959

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1459441_HHumanacute myeloid leukemia  IAGPrs1764123405850206 GWAS_CATALOGPMID:27903959

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
10402689LINC01622long intergenic non-protein coding RNA 162269610031101332Human
155650134LOC127405093NANOG hESC enhancer GRCh37_chr6:1028326-1028839610280911028604Human


Peak: (rs1764123)
Human AssemblyChrPosition (strand)Source
GRCh3861,028,554 - 1,028,555RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597363368GWAS1459442_Hacute myeloid leukemia QTL GWAS1459442 (human)7e-13leukocyte integrity trait (VT:0010898)610285541028555Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597363367GWAS1459441_Hacute myeloid leukemia QTL GWAS1459441 (human)1e-25leukocyte integrity trait (VT:0010898)610285541028555Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1459441_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls T 0.0 1E-25 25 rs1764123 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
GWAS1459442_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls G 0.315 7E-13 12.155 rs1764123 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
Database
Acc Id
Source(s)
GWAS Catalog GCST008413 GWAS Catalog

Note Type Note Reference