TFB2MP1 (TFB2M pseudogene 1) - Rat Genome Database

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Gene: TFB2MP1 (TFB2M pseudogene 1) Homo sapiens
Analyze
Symbol: TFB2MP1 (Ensembl: AL139094.1)
Name: TFB2M pseudogene 1 (Ensembl:transcription factor B2, mitochondrial (TFB2M) pseudogene)
RGD ID: 16552454
HGNC Page HGNC:56898
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AL139094.1; LOC442155; transcription factor B2, mitochondrial (TFB2M) pseudogene; transcription factor B2, mitochondrial pseudogene
Related Functional Gene: TFB2M  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3865,065,607 - 5,067,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl65,065,795 - 5,066,982 (-)EnsemblGRCh38hg38GRCh38
GRCh3765,065,841 - 5,067,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p25.1NCBI
HuRef64,940,337 - 4,941,512 (-)NCBIHuRef
CHM1_165,068,167 - 5,069,342 (-)NCBICHM1_1
T2T-CHM13v2.064,934,822 - 4,936,256 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:123
Interacting mature miRNAs:124
Transcripts:ENST00000405549, ENST00000539017
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 335 190 389 45 342 45 390 143 1500 71 348 317 7 39 174 2
Below cutoff 1947 1976 1198 443 823 323 3303 1754 2113 308 1027 1151 125 1058 2155 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000405549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl65,065,795 - 5,066,982 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TFB2MP1 COSMIC
Ensembl Genes ENSG00000220685 Ensembl, ENTREZGENE
GTEx ENSG00000220685 GTEx
HGNC ID HGNC:56898 ENTREZGENE
Human Proteome Map TFB2MP1 Human Proteome Map
NCBI Gene LOC442155 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-02 TFB2MP1  TFB2M pseudogene 1  AL139094.1  transcription factor B2, mitochondrial (TFB2M) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AL139094.1  transcription factor B2, mitochondrial (TFB2M) pseudogene  LOC442155  transcription factor B2, mitochondrial pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC442155  transcription factor B2, mitochondrial pseudogene  AL139094.1  transcription factor B2, mitochondrial (TFB2M) pseudogene  Symbol and/or name change 5135510 APPROVED