GWAS1123022_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1123022_H (body mass index QTL GWAS1123022 (human)) Homo sapiens

Symbol: GWAS1123022_H
Name: body mass index QTL GWAS1123022 (human)
RGD ID: 597026948
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 5.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38612,124,622 - 12,124,623RGD_MAPPER_PIPELINEGRCh38
GRCh37612,124,855 - 12,124,856RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1123022_HHumanbody mass index (BMI)  IAGPrs2228213405850206 GWAS_CATALOGPMID:30239722

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1123022_HHumanbody mass index  IAGPrs2228213405850206 GWAS_CATALOGPMID:30239722

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736425HIVEP1HIVEP zinc finger 161200769312212048Human


Peak: (rs2228213)
Human AssemblyChrPosition (strand)Source
GRCh38612,124,622 - 12,124,623RGD_MAPPER_PIPELINE


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596960981GWAS1080500_Hmetabolic syndrome QTL GWAS1080500 (human)3e-10metabolic syndrome61212462212124623Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597059270GWAS1155344_Hmetabolic syndrome QTL GWAS1155344 (human)3e-10metabolic syndrome61212462212124623Human
597026948GWAS1123022_Hbody mass index QTL GWAS1123022 (human)5e-17body mass indexbody mass index (BMI) (CMO:0000105)61212462212124623Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597075332GWAS1171406_Hbody mass index QTL GWAS1171406 (human)1e-10body mass indexbody mass index (BMI) (CMO:0000105)61212462212124623Human
597091204GWAS1187278_Hbody mass index QTL GWAS1187278 (human)0.0000003body mass indexbody mass index (BMI) (CMO:0000105)61212462212124623Human
597214666GWAS1310740_Hbody mass index QTL GWAS1310740 (human)3e-13body mass indexbody mass index (BMI) (CMO:0000105)61212462212124623Human

1 to 10 of 26 rows


1 to 15 of 15 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1123022_H GCST009003 Body mass index 434,794 European ancestry female individuals A 0.3374 5E-17 16.302 rs2228213 0.0144 body mass index (EFO:0004340)
 PMID:30239722
GWAS1115860_H GCST005951 Body mass index up to 309,889 European ancestry individuals A 0.350367241144557 2E-9 8.699 rs2228213 0.016712787 body mass index (EFO:0004340)
 PMID:26426971
GWAS1637135_H GCST90479666 lymphocyte (fraction, maximum, inv-norm transformed) 81,257 African American or Afro-Caribbean individuals, 40,768 Hispanic or Latin American individuals, 4,294 East Asian ancestry individuals, 290,958 European ancestry individuals G 0.7107 2E-13 12.699 rs2228213 0.02296 lymphocyte count (EFO:0004587)
 PMID:39024449
None Available GCST009001 Body mass index 374,756 European ancestry male individuals A 0.3374 5E-17 16.302 rs2228213 0.0144 body mass index (EFO:0004340)
 PMID:30239722
GWAS1127729_H GCST009004 Body mass index 806,834 European ancestry individuals A 0.3374 6E-17 16.222 rs2228213 0.0144 body mass index (EFO:0004340)
 PMID:30239722
GWAS599500_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.649 0.000004 5.398 rs2228213 0.019 body mass index (EFO:0004340)
 PMID:25673413
GWAS1155344_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 3E-10 9.523 rs2228213 0.00812465 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS1171406_H GCST004904 Body mass index up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men A 0.33 1E-10 10 rs2228213 0.016 body mass index (EFO:0004340)
 PMID:28892062
GWAS686411_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.647 0.000001 6 rs2228213 0.016 body mass index (EFO:0004340)
 PMID:25673413
GWAS1187278_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.652 3E-7 6.523 rs2228213 0.016 body mass index (EFO:0004340)
 PMID:25673413
GWAS1274934_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 7E-24 23.155 rs2228213 0.0139 body mass index (EFO:0004340)
 PMID:36581621
GWAS1277255_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 4E-17 16.398 rs2228213 0.01424 body mass index (EFO:0004340)
 PMID:36376304
GWAS1310740_H GCST008129 Body mass index up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals G 0.6698999999999999 3E-13 12.523 rs2228213 0.0137 body mass index (EFO:0004340)
 PMID:29273807
None Available GCST006368 Body mass index 315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals G NR 3E-7 6.523 rs2228213 0.014 body mass index (EFO:0004340)
 PMID:30108127
GWAS1395698_H GCST90446645 Body mass index 650,000 European ancestry individuals G 0.6592 2E-17 16.699 rs2228213 0.0155 body mass index (EFO:0004340)
 PMID:39375568
1 to 15 of 15 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST009001 GWAS Catalog
  GCST009003 GWAS Catalog

Note Type Note Reference