GWAS1527403_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1527403_H (Inguinal hernia QTL GWAS1527403 (human)) Homo sapiens

Symbol: GWAS1527403_H
Name: Inguinal hernia QTL GWAS1527403 (human)
RGD ID: 597431329
Trait: Inguinal hernia
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3866,738,801 - 6,738,802RGD_MAPPER_PIPELINEGRCh38
GRCh3766,739,034 - 6,739,035RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1527403_HHumanInguinal hernia  IAGPrs1294411405850206 GWAS_CATALOGPMID:34382107

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38645641LOC101928004uncharacterized LOC101928004666947926801171Human


Peak: (rs1294411)
Human AssemblyChrPosition (strand)Source
GRCh3866,738,801 - 6,738,802RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
597510751GWAS1606825_HBMI-adjusted hip circumference QTL GWAS1606825 (human)2e-09BMI-adjusted hip circumferencehip circumference (CMO:0000014)667388016738802Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597382492GWAS1478566_HFEV/FVC ratio QTL GWAS1478566 (human)3e-50FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)667388016738802Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597431329GWAS1527403_HInguinal hernia QTL GWAS1527403 (human)1e-09Inguinal hernia667388016738802Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1527403_H GCST90027168 Inguinal hernia 13,047 European ancestry cases, 262,499 European ancestry controls T 0.51 1E-9 9 rs1294411 1.07 Inguinal hernia (HP:0000023)
 PMID:34382107
GWAS1478566_H GCST007080 Lung function (FEV1/FVC) approximately 370,000 European ancestry individuals ? NR 3E-50 49.523 rs1294411 N/A FEV/FVC ratio (EFO:0004713)
 PMID:30595370
GWAS1606825_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men C NR 2E-9 8.699 rs1294411 0.0184135 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST90027168 GWAS Catalog

Note Type Note Reference